miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31908 5' -55.5 NC_006938.1 + 54644 0.66 0.74497
Target:  5'- cGGUGAcGUucuuaguggaUCCCAUGGcggccugGACGCGGCCc -3'
miRNA:   3'- aCCGUU-CA----------AGGGUGCC-------UUGCGCUGGu -5'
31908 5' -55.5 NC_006938.1 + 37475 0.66 0.734593
Target:  5'- cGGCugcUUgCCGgGGAcuccuccGCGCGACCAg -3'
miRNA:   3'- aCCGuucAAgGGUgCCU-------UGCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 46286 0.66 0.714606
Target:  5'- uUGGCAAuggCCgCGCGGcggacguugAugGCGACCGc -3'
miRNA:   3'- -ACCGUUcaaGG-GUGCC---------UugCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 9899 0.66 0.714606
Target:  5'- gGGCGcGUUCCCGCuguacgacGAGCGCuACCu -3'
miRNA:   3'- aCCGUuCAAGGGUGc-------CUUGCGcUGGu -5'
31908 5' -55.5 NC_006938.1 + 41965 0.66 0.714606
Target:  5'- cGGCucGUUCggCACGGAGCGC-AUCAu -3'
miRNA:   3'- aCCGuuCAAGg-GUGCCUUGCGcUGGU- -5'
31908 5' -55.5 NC_006938.1 + 38010 0.67 0.702899
Target:  5'- gGGCAAcaUCCUGCgccucaaGGGACGCGAgCAc -3'
miRNA:   3'- aCCGUUcaAGGGUG-------CCUUGCGCUgGU- -5'
31908 5' -55.5 NC_006938.1 + 8990 0.67 0.693259
Target:  5'- cGGCcacGGcUCCauCAUGGAGCGCG-CCAa -3'
miRNA:   3'- aCCGu--UCaAGG--GUGCCUUGCGCuGGU- -5'
31908 5' -55.5 NC_006938.1 + 40364 0.67 0.67168
Target:  5'- aGGaCGGGcUCCCuCGGAucgaaguCGUGGCCAa -3'
miRNA:   3'- aCC-GUUCaAGGGuGCCUu------GCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 26131 0.67 0.66083
Target:  5'- gUGGCAGG---CCACGGGcCGCG-CCGg -3'
miRNA:   3'- -ACCGUUCaagGGUGCCUuGCGCuGGU- -5'
31908 5' -55.5 NC_006938.1 + 26663 0.67 0.66083
Target:  5'- cGGCGAGgg-CCGCuGGAcCGCGAUCu -3'
miRNA:   3'- aCCGUUCaagGGUG-CCUuGCGCUGGu -5'
31908 5' -55.5 NC_006938.1 + 30739 0.67 0.649954
Target:  5'- gGGCGAGUgggagggcgUCCUGCaGGcucaggcaGACGCGAUCAa -3'
miRNA:   3'- aCCGUUCA---------AGGGUG-CC--------UUGCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 62129 0.68 0.628164
Target:  5'- gUGGCAGGUagugCaCC-CGGcccGugGCGACCGg -3'
miRNA:   3'- -ACCGUUCAa---G-GGuGCC---UugCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 38654 0.68 0.61727
Target:  5'- cUGGCAGGUgaggaUCCCGCuGAcuccauCGCGACaCGg -3'
miRNA:   3'- -ACCGUUCA-----AGGGUGcCUu-----GCGCUG-GU- -5'
31908 5' -55.5 NC_006938.1 + 22516 0.68 0.606388
Target:  5'- aGGCGAGUgcgcUCCCgagACGcGAACaGCGACg- -3'
miRNA:   3'- aCCGUUCA----AGGG---UGC-CUUG-CGCUGgu -5'
31908 5' -55.5 NC_006938.1 + 38439 0.69 0.584698
Target:  5'- cGGCuuGUUgCUguacaggguCGGAACGCGGCCGa -3'
miRNA:   3'- aCCGuuCAAgGGu--------GCCUUGCGCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 19330 0.69 0.584698
Target:  5'- gUGGCAcGGUUCuUCAUGGA-CGCGGCgGa -3'
miRNA:   3'- -ACCGU-UCAAG-GGUGCCUuGCGCUGgU- -5'
31908 5' -55.5 NC_006938.1 + 9406 0.69 0.552474
Target:  5'- gUGGUAccaGGUgucaauggCCCACGuGAACGCG-CCGu -3'
miRNA:   3'- -ACCGU---UCAa-------GGGUGC-CUUGCGCuGGU- -5'
31908 5' -55.5 NC_006938.1 + 48184 0.69 0.530235
Target:  5'- cGGCAAGcccaaUCCCACGGGcgacaacACGCaGGuCCAg -3'
miRNA:   3'- aCCGUUCa----AGGGUGCCU-------UGCG-CU-GGU- -5'
31908 5' -55.5 NC_006938.1 + 12055 0.7 0.520804
Target:  5'- gGGCAGGUugUUCCACGcGGCGaCGAUCGc -3'
miRNA:   3'- aCCGUUCA--AGGGUGCcUUGC-GCUGGU- -5'
31908 5' -55.5 NC_006938.1 + 13548 0.7 0.514553
Target:  5'- aGGCGGGgccaCCCACacgggcgauccaguuGGAccgaGCGCGGCCGg -3'
miRNA:   3'- aCCGUUCaa--GGGUG---------------CCU----UGCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.