miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31912 5' -59.6 NC_006938.1 + 25356 0.66 0.552719
Target:  5'- uGCGcGUGAcGCGcuuCCGCaUCGUGAGCg -3'
miRNA:   3'- cCGC-CACUuCGUcc-GGCG-AGCGCUCG- -5'
31912 5' -59.6 NC_006938.1 + 36953 0.66 0.542412
Target:  5'- uGGCGaGagcGAGGaucaGGGCUGUUCG-GAGCg -3'
miRNA:   3'- -CCGC-Ca--CUUCg---UCCGGCGAGCgCUCG- -5'
31912 5' -59.6 NC_006938.1 + 30105 0.66 0.532169
Target:  5'- cGGCGGaggcugGGAGUucugccuGGgCGUUCGCGcgGGCa -3'
miRNA:   3'- -CCGCCa-----CUUCGu------CCgGCGAGCGC--UCG- -5'
31912 5' -59.6 NC_006938.1 + 30775 0.66 0.5119
Target:  5'- cGCGaucaaGGAGCAGGCC-CgacgCGUGGGCu -3'
miRNA:   3'- cCGCca---CUUCGUCCGGcGa---GCGCUCG- -5'
31912 5' -59.6 NC_006938.1 + 54053 0.66 0.5119
Target:  5'- -aCGGUGGGagGGGCUGCUCGCc-GCa -3'
miRNA:   3'- ccGCCACUUcgUCCGGCGAGCGcuCG- -5'
31912 5' -59.6 NC_006938.1 + 27823 0.66 0.501885
Target:  5'- cGGCGGccgGAAGgguCAGGuCCaGCUgGaCGGGCg -3'
miRNA:   3'- -CCGCCa--CUUC---GUCC-GG-CGAgC-GCUCG- -5'
31912 5' -59.6 NC_006938.1 + 29651 0.67 0.482121
Target:  5'- -aUGGUGGAGgAGGaucugGCUCGaCGAGCc -3'
miRNA:   3'- ccGCCACUUCgUCCgg---CGAGC-GCUCG- -5'
31912 5' -59.6 NC_006938.1 + 15469 0.67 0.462741
Target:  5'- uGGCcucgaccaGGAGCGGGCUGa-CGCGGGCg -3'
miRNA:   3'- -CCGcca-----CUUCGUCCGGCgaGCGCUCG- -5'
31912 5' -59.6 NC_006938.1 + 11871 0.67 0.443778
Target:  5'- aGUGG-GGAGCcGGuuGaCUCGCgGAGCc -3'
miRNA:   3'- cCGCCaCUUCGuCCggC-GAGCG-CUCG- -5'
31912 5' -59.6 NC_006938.1 + 39923 0.67 0.443778
Target:  5'- cGGCucGUGggGCGGGgccaCGCUCagugGCgGAGCg -3'
miRNA:   3'- -CCGc-CACuuCGUCCg---GCGAG----CG-CUCG- -5'
31912 5' -59.6 NC_006938.1 + 20898 0.68 0.434462
Target:  5'- aGGUGGUGGAGCcgccauAGGCUGUUCccaGGGa -3'
miRNA:   3'- -CCGCCACUUCG------UCCGGCGAGcg-CUCg -5'
31912 5' -59.6 NC_006938.1 + 46646 0.68 0.42526
Target:  5'- aGGUGGUGGccugggacugaAGUGGGUCucggaccagcuGCUCaaGCGAGCg -3'
miRNA:   3'- -CCGCCACU-----------UCGUCCGG-----------CGAG--CGCUCG- -5'
31912 5' -59.6 NC_006938.1 + 33895 0.68 0.398368
Target:  5'- cGGCGGc--AG-GGGCgGCUCGuCGAGCc -3'
miRNA:   3'- -CCGCCacuUCgUCCGgCGAGC-GCUCG- -5'
31912 5' -59.6 NC_006938.1 + 20350 0.69 0.37259
Target:  5'- aGCaGGUGGacAGCuGGCCGgUCcGCGAGg -3'
miRNA:   3'- cCG-CCACU--UCGuCCGGCgAG-CGCUCg -5'
31912 5' -59.6 NC_006938.1 + 55573 0.7 0.309575
Target:  5'- gGGCGG--GAGCuGGGCCgGgUCGcCGAGCa -3'
miRNA:   3'- -CCGCCacUUCG-UCCGG-CgAGC-GCUCG- -5'
31912 5' -59.6 NC_006938.1 + 51488 0.7 0.295146
Target:  5'- cGGCGGUGAcGCGGaucacuGCCaGCUUGUucaGGGCg -3'
miRNA:   3'- -CCGCCACUuCGUC------CGG-CGAGCG---CUCG- -5'
31912 5' -59.6 NC_006938.1 + 51939 0.71 0.281247
Target:  5'- cGGCGGUGGgcucGGCGGuGCCGCccgaucugcCGCGAa- -3'
miRNA:   3'- -CCGCCACU----UCGUC-CGGCGa--------GCGCUcg -5'
31912 5' -59.6 NC_006938.1 + 52245 0.71 0.274494
Target:  5'- uGGUGGaGGAGguGGCCuGUUCGgaGGGCu -3'
miRNA:   3'- -CCGCCaCUUCguCCGG-CGAGCg-CUCG- -5'
31912 5' -59.6 NC_006938.1 + 25600 0.71 0.274494
Target:  5'- cGGCcGUGAA-CGGGuuGCUCGCgccaGAGCc -3'
miRNA:   3'- -CCGcCACUUcGUCCggCGAGCG----CUCG- -5'
31912 5' -59.6 NC_006938.1 + 28935 0.72 0.230824
Target:  5'- aGGCGGagucaacaaGAGGCucgAGGCCGCUgGCcuGGGCg -3'
miRNA:   3'- -CCGCCa--------CUUCG---UCCGGCGAgCG--CUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.