miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31996 5' -49 NC_006949.1 + 16403 0.66 0.948308
Target:  5'- cCGUAACGGCgACCaccuGCaagagccagccccuuAGCAGCa -3'
miRNA:   3'- uGUAUUGCCGaUGGguauUG---------------UCGUCG- -5'
31996 5' -49 NC_006949.1 + 18849 0.66 0.946325
Target:  5'- cCGUAGCGGCUGCcguuuCCGUuauccgcgaccgGAaccaaugccaauCAGCAGCu -3'
miRNA:   3'- uGUAUUGCCGAUG-----GGUA------------UU------------GUCGUCG- -5'
31996 5' -49 NC_006949.1 + 6817 0.66 0.94115
Target:  5'- ---gAACGGCgACCCGaauauuCAGguGCa -3'
miRNA:   3'- uguaUUGCCGaUGGGUauu---GUCguCG- -5'
31996 5' -49 NC_006949.1 + 44338 0.66 0.923742
Target:  5'- aACAUGAUcuGUUAaccgCCAUGAUGGCGGCa -3'
miRNA:   3'- -UGUAUUGc-CGAUg---GGUAUUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 5128 0.67 0.917308
Target:  5'- -aGUAGCGGCU-CCaacuucguGCAGCAGg -3'
miRNA:   3'- ugUAUUGCCGAuGGguau----UGUCGUCg -5'
31996 5' -49 NC_006949.1 + 45878 0.67 0.91056
Target:  5'- uCGUGACGGCgACCaaacuCAGCcGCa -3'
miRNA:   3'- uGUAUUGCCGaUGGguauuGUCGuCG- -5'
31996 5' -49 NC_006949.1 + 30869 0.67 0.91056
Target:  5'- -gAUGACGGCUugUCAggugAAUAcGCAGa -3'
miRNA:   3'- ugUAUUGCCGAugGGUa---UUGU-CGUCg -5'
31996 5' -49 NC_006949.1 + 29716 0.67 0.91056
Target:  5'- gGCGUAAC-GCUGuaauuUCCAccuCAGCAGCg -3'
miRNA:   3'- -UGUAUUGcCGAU-----GGGUauuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 25402 0.67 0.90205
Target:  5'- uUAUGAC-GCUcaGCCCAUGcaguuaaccccuCAGCAGCa -3'
miRNA:   3'- uGUAUUGcCGA--UGGGUAUu-----------GUCGUCG- -5'
31996 5' -49 NC_006949.1 + 883 0.67 0.89613
Target:  5'- -gGUuACGuGgaACCCGgagaagGACGGCAGCg -3'
miRNA:   3'- ugUAuUGC-CgaUGGGUa-----UUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 38660 0.68 0.880485
Target:  5'- gGCAUgaGugGGUUGCCgGUAACGucaaCGGCg -3'
miRNA:   3'- -UGUA--UugCCGAUGGgUAUUGUc---GUCG- -5'
31996 5' -49 NC_006949.1 + 25989 0.68 0.880485
Target:  5'- uGCAUacGAUGGCUGCgCAUuauuCAGCuuccAGCa -3'
miRNA:   3'- -UGUA--UUGCCGAUGgGUAuu--GUCG----UCG- -5'
31996 5' -49 NC_006949.1 + 14273 0.68 0.880485
Target:  5'- aGCAacuGCGGCcuuUACCUuc-GCAGCGGUa -3'
miRNA:   3'- -UGUau-UGCCG---AUGGGuauUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 19927 0.68 0.872222
Target:  5'- gACAgcAACcGCaAUCCAUGccGCAGCAGCg -3'
miRNA:   3'- -UGUa-UUGcCGaUGGGUAU--UGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 33437 0.68 0.872222
Target:  5'- -gAUGcUGGCaugGCCCAgccCGGCAGCg -3'
miRNA:   3'- ugUAUuGCCGa--UGGGUauuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 24455 0.68 0.871379
Target:  5'- --uUAACuGCUACCCAUugccaguuaaaugGAUAGcCAGCg -3'
miRNA:   3'- uguAUUGcCGAUGGGUA-------------UUGUC-GUCG- -5'
31996 5' -49 NC_006949.1 + 34914 0.68 0.854851
Target:  5'- aACAc--UGGCUACCagu--CAGCAGCa -3'
miRNA:   3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 34860 0.68 0.854851
Target:  5'- aACAc--UGGCUACCagu--CAGCAGCa -3'
miRNA:   3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 34833 0.68 0.854851
Target:  5'- aACAc--UGGCUACCagu--CAGCAGCg -3'
miRNA:   3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 3646 0.68 0.854851
Target:  5'- --cUAACGGCucuucgucaucaUugUCAUAGcCAGCAGCu -3'
miRNA:   3'- uguAUUGCCG------------AugGGUAUU-GUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.