miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31996 5' -49 NC_006949.1 + 883 0.67 0.89613
Target:  5'- -gGUuACGuGgaACCCGgagaagGACGGCAGCg -3'
miRNA:   3'- ugUAuUGC-CgaUGGGUa-----UUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 3646 0.68 0.854851
Target:  5'- --cUAACGGCucuucgucaucaUugUCAUAGcCAGCAGCu -3'
miRNA:   3'- uguAUUGCCG------------AugGGUAUU-GUCGUCG- -5'
31996 5' -49 NC_006949.1 + 5128 0.67 0.917308
Target:  5'- -aGUAGCGGCU-CCaacuucguGCAGCAGg -3'
miRNA:   3'- ugUAUUGCCGAuGGguau----UGUCGUCg -5'
31996 5' -49 NC_006949.1 + 5959 0.7 0.753839
Target:  5'- -aGUGACGGCagUGCCU--GGCAGUAGUu -3'
miRNA:   3'- ugUAUUGCCG--AUGGGuaUUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 6161 0.69 0.816998
Target:  5'- -aGUAAuCGGCUACagCCAUGACGaguucaccaucGCAGCc -3'
miRNA:   3'- ugUAUU-GCCGAUG--GGUAUUGU-----------CGUCG- -5'
31996 5' -49 NC_006949.1 + 6817 0.66 0.94115
Target:  5'- ---gAACGGCgACCCGaauauuCAGguGCa -3'
miRNA:   3'- uguaUUGCCGaUGGGUauu---GUCguCG- -5'
31996 5' -49 NC_006949.1 + 9568 0.73 0.603463
Target:  5'- uGCGUAaacGCGGC-GCUCAUAuCGGCAGUu -3'
miRNA:   3'- -UGUAU---UGCCGaUGGGUAUuGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 9949 0.69 0.826824
Target:  5'- -aAUGAUGaGCUAUCUgaAACAGUAGCu -3'
miRNA:   3'- ugUAUUGC-CGAUGGGuaUUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 10496 0.76 0.45685
Target:  5'- ---gGAUGGCU-CCCGgccugAACAGCAGCc -3'
miRNA:   3'- uguaUUGCCGAuGGGUa----UUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 14225 1.14 0.001593
Target:  5'- aACAUAACGGCUACCCAUAACAGCAGCa -3'
miRNA:   3'- -UGUAUUGCCGAUGGGUAUUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 14273 0.68 0.880485
Target:  5'- aGCAacuGCGGCcuuUACCUuc-GCAGCGGUa -3'
miRNA:   3'- -UGUau-UGCCG---AUGGGuauUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 14355 0.72 0.66222
Target:  5'- ---cGGCGGCUGCgCgCAgaucGGCGGCAGCu -3'
miRNA:   3'- uguaUUGCCGAUG-G-GUa---UUGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 14475 0.7 0.775606
Target:  5'- ---cGGCGGCUACgCG-AGCGGCAGa -3'
miRNA:   3'- uguaUUGCCGAUGgGUaUUGUCGUCg -5'
31996 5' -49 NC_006949.1 + 15811 0.71 0.697188
Target:  5'- ---cAGCGGCUugCCAau-CAGCAcGCg -3'
miRNA:   3'- uguaUUGCCGAugGGUauuGUCGU-CG- -5'
31996 5' -49 NC_006949.1 + 16294 0.7 0.786242
Target:  5'- uCAcGGCGGCcggaGCCCAagcagauGCGGCGGCg -3'
miRNA:   3'- uGUaUUGCCGa---UGGGUau-----UGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 16403 0.66 0.948308
Target:  5'- cCGUAACGGCgACCaccuGCaagagccagccccuuAGCAGCa -3'
miRNA:   3'- uGUAUUGCCGaUGGguauUG---------------UCGUCG- -5'
31996 5' -49 NC_006949.1 + 18849 0.66 0.946325
Target:  5'- cCGUAGCGGCUGCcguuuCCGUuauccgcgaccgGAaccaaugccaauCAGCAGCu -3'
miRNA:   3'- uGUAUUGCCGAUG-----GGUA------------UU------------GUCGUCG- -5'
31996 5' -49 NC_006949.1 + 19202 0.71 0.742737
Target:  5'- uGCAUuGCGGuCUGCUCcUGACAGaaaaGGCa -3'
miRNA:   3'- -UGUAuUGCC-GAUGGGuAUUGUCg---UCG- -5'
31996 5' -49 NC_006949.1 + 19927 0.68 0.872222
Target:  5'- gACAgcAACcGCaAUCCAUGccGCAGCAGCg -3'
miRNA:   3'- -UGUa-UUGcCGaUGGGUAU--UGUCGUCG- -5'
31996 5' -49 NC_006949.1 + 22347 0.7 0.775606
Target:  5'- cGCAUGACGGggACCaggu-CAGCAGa -3'
miRNA:   3'- -UGUAUUGCCgaUGGguauuGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.