Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31996 | 5' | -49 | NC_006949.1 | + | 24455 | 0.68 | 0.871379 |
Target: 5'- --uUAACuGCUACCCAUugccaguuaaaugGAUAGcCAGCg -3' miRNA: 3'- uguAUUGcCGAUGGGUA-------------UUGUC-GUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 25019 | 0.69 | 0.806951 |
Target: 5'- aACAUGgucACGGCUGCCUugGUGGCucaaAGCg -3' miRNA: 3'- -UGUAU---UGCCGAUGGG--UAUUGucg-UCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 25402 | 0.67 | 0.90205 |
Target: 5'- uUAUGAC-GCUcaGCCCAUGcaguuaaccccuCAGCAGCa -3' miRNA: 3'- uGUAUUGcCGA--UGGGUAUu-----------GUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 25989 | 0.68 | 0.880485 |
Target: 5'- uGCAUacGAUGGCUGCgCAUuauuCAGCuuccAGCa -3' miRNA: 3'- -UGUA--UUGCCGAUGgGUAuu--GUCG----UCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 29716 | 0.67 | 0.91056 |
Target: 5'- gGCGUAAC-GCUGuaauuUCCAccuCAGCAGCg -3' miRNA: 3'- -UGUAUUGcCGAU-----GGGUauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 30869 | 0.67 | 0.91056 |
Target: 5'- -gAUGACGGCUugUCAggugAAUAcGCAGa -3' miRNA: 3'- ugUAUUGCCGAugGGUa---UUGU-CGUCg -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 31117 | 0.69 | 0.826824 |
Target: 5'- gACGUGcCGGagcgAgCCAUGAUGGCGGCc -3' miRNA: 3'- -UGUAUuGCCga--UgGGUAUUGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 33437 | 0.68 | 0.872222 |
Target: 5'- -gAUGcUGGCaugGCCCAgccCGGCAGCg -3' miRNA: 3'- ugUAUuGCCGa--UGGGUauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 33629 | 0.72 | 0.673926 |
Target: 5'- --uUGACGGCUucuACCUgcGUGuuuuCAGCAGCa -3' miRNA: 3'- uguAUUGCCGA---UGGG--UAUu---GUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 34833 | 0.68 | 0.854851 |
Target: 5'- aACAc--UGGCUACCagu--CAGCAGCg -3' miRNA: 3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 34860 | 0.68 | 0.854851 |
Target: 5'- aACAc--UGGCUACCagu--CAGCAGCa -3' miRNA: 3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 34914 | 0.68 | 0.854851 |
Target: 5'- aACAc--UGGCUACCagu--CAGCAGCa -3' miRNA: 3'- -UGUauuGCCGAUGGguauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 35104 | 0.71 | 0.708717 |
Target: 5'- uCAUGACuGGCga-CCAgu-CAGCAGCa -3' miRNA: 3'- uGUAUUG-CCGaugGGUauuGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 38660 | 0.68 | 0.880485 |
Target: 5'- gGCAUgaGugGGUUGCCgGUAACGucaaCGGCg -3' miRNA: 3'- -UGUA--UugCCGAUGGgUAUUGUc---GUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 44338 | 0.66 | 0.923742 |
Target: 5'- aACAUGAUcuGUUAaccgCCAUGAUGGCGGCa -3' miRNA: 3'- -UGUAUUGc-CGAUg---GGUAUUGUCGUCG- -5' |
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31996 | 5' | -49 | NC_006949.1 | + | 45878 | 0.67 | 0.91056 |
Target: 5'- uCGUGACGGCgACCaaacuCAGCcGCa -3' miRNA: 3'- uGUAUUGCCGaUGGguauuGUCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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