Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32003 | 3' | -53.9 | NC_006949.1 | + | 35025 | 1.03 | 0.002692 |
Target: 5'- aACCAACACUGGCgACCAGUCAGCGGCa -3' miRNA: 3'- -UGGUUGUGACCGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 35079 | 0.96 | 0.008189 |
Target: 5'- aACCAACACUGGCaACUGGUCAGCGGCa -3' miRNA: 3'- -UGGUUGUGACCGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 34998 | 0.96 | 0.008189 |
Target: 5'- aACCAACACUGGCaACUGGUCAGCGGCa -3' miRNA: 3'- -UGGUUGUGACCGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 34971 | 0.96 | 0.008189 |
Target: 5'- aACCAACACUGGCaACUGGUCAGCGGCa -3' miRNA: 3'- -UGGUUGUGACCGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 35052 | 0.94 | 0.011146 |
Target: 5'- aACCAACACUGGCaACUGGUCAGCAGCn -3' miRNA: 3'- -UGGUUGUGACCGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 24544 | 0.66 | 0.704722 |
Target: 5'- uACC-GCGCUGGCUAUCcauuuaacuggcaauGGgUAGCAGUu -3' miRNA: 3'- -UGGuUGUGACCGAUGG---------------UCaGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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