miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 3' -57.6 NC_007016.1 + 130979 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 592 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130727 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130799 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130763 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130835 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130943 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130907 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130871 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 556 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 520 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 473 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 437 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 376 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 340 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 412 1.07 0.001874
Target:  5'- nCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- cGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130702 1.07 0.001874
Target:  5'- nCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- cGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 130630 0.81 0.110918
Target:  5'- aGCaAGCGAGCAGGCCAGCAGGCcauAGuGUu -3'
miRNA:   3'- -CGgUCGUUCGUCCGGUCGUUCG---UC-CG- -5'
32068 3' -57.6 NC_007016.1 + 255 0.81 0.110918
Target:  5'- aGCaAGCGAGCAGGCCAGCAGGCcauAGuGUu -3'
miRNA:   3'- -CGgUCGUUCGUCCGGUCGUUCG---UC-CG- -5'
32068 3' -57.6 NC_007016.1 + 92719 0.8 0.137125
Target:  5'- -aCAGUugGAGCGGGCCGGUgcGCGGGCu -3'
miRNA:   3'- cgGUCG--UUCGUCCGGUCGuuCGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.