miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 3' -57.6 NC_007016.1 + 255 0.81 0.110918
Target:  5'- aGCaAGCGAGCAGGCCAGCAGGCcauAGuGUu -3'
miRNA:   3'- -CGgUCGUUCGUCCGGUCGUUCG---UC-CG- -5'
32068 3' -57.6 NC_007016.1 + 315 0.7 0.558219
Target:  5'- nCCAGCAAGCAGGCCuacugucccucuaaaGacccucagcaGCAAGCuuGCa -3'
miRNA:   3'- cGGUCGUUCGUCCGG---------------U----------CGUUCGucCG- -5'
32068 3' -57.6 NC_007016.1 + 340 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 376 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 412 1.07 0.001874
Target:  5'- nCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- cGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 437 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 473 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 495 0.78 0.187168
Target:  5'- nCCAGCAAGCAGGCCA-CAAGCAn-- -3'
miRNA:   3'- cGGUCGUUCGUCCGGUcGUUCGUccg -5'
32068 3' -57.6 NC_007016.1 + 520 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 556 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 592 1.12 0.000801
Target:  5'- gGCCAGCAAGCAGGCCAGCAAGCAGGCc -3'
miRNA:   3'- -CGGUCGUUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 645 0.67 0.739541
Target:  5'- cUCAGCA-GCA----AGCAAGCAGGCa -3'
miRNA:   3'- cGGUCGUuCGUccggUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 686 0.7 0.513813
Target:  5'- cGCCgGGCAAGCGGcCCAGaucugcccGGCAGGUc -3'
miRNA:   3'- -CGG-UCGUUCGUCcGGUCgu------UCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 709 0.76 0.255094
Target:  5'- aGCaAGCAAGCAGGCagcccuacUguccccucagcagcaAGCAAGCAGGCa -3'
miRNA:   3'- -CGgUCGUUCGUCCG--------G---------------UCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 1148 0.66 0.768852
Target:  5'- -gCGGCAGGCAGGCgguuuuauugUAGCGgauGGguGGg -3'
miRNA:   3'- cgGUCGUUCGUCCG----------GUCGU---UCguCCg -5'
32068 3' -57.6 NC_007016.1 + 1713 0.76 0.258847
Target:  5'- gGCCGuagauguuccGC-GGCAGGUUAGCAAGUAGGUa -3'
miRNA:   3'- -CGGU----------CGuUCGUCCGGUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 8607 0.66 0.778382
Target:  5'- cGCCGGCGcuaggggucgguAGCuguuccucgggGGGCUGGCAggaAGCGguGGCg -3'
miRNA:   3'- -CGGUCGU------------UCG-----------UCCGGUCGU---UCGU--CCG- -5'
32068 3' -57.6 NC_007016.1 + 10330 0.67 0.727556
Target:  5'- gGCCAGCAcgacguuGGCgGGGCCGGgAAagagaucGCucuGGCg -3'
miRNA:   3'- -CGGUCGU-------UCG-UCCGGUCgUU-------CGu--CCG- -5'
32068 3' -57.6 NC_007016.1 + 12925 0.66 0.787777
Target:  5'- cGCCGGCAuGCA--CCAGCuacaacaggaaGAGCguAGGCg -3'
miRNA:   3'- -CGGUCGUuCGUccGGUCG-----------UUCG--UCCG- -5'
32068 3' -57.6 NC_007016.1 + 13263 0.73 0.351433
Target:  5'- cGCgCGGCucuGGCGGG-CGGCAAGUacAGGCg -3'
miRNA:   3'- -CG-GUCGu--UCGUCCgGUCGUUCG--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.