miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32073 5' -60.6 NC_007016.1 + 14267 1.12 0.000646
Target:  5'- gUGGCGCACGGGAAUCCCGCCUCUCCCa -3'
miRNA:   3'- -ACCGCGUGCCCUUAGGGCGGAGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 13518 0.74 0.254891
Target:  5'- cGGCGggaACGGGAucgugaccgggaucAUCCCGCCUgCcCCCg -3'
miRNA:   3'- aCCGCg--UGCCCU--------------UAGGGCGGA-GaGGG- -5'
32073 5' -60.6 NC_007016.1 + 17945 0.72 0.336828
Target:  5'- aGGCGaagcCGGGAAaccucuUCCCGaCCagUCUCCCg -3'
miRNA:   3'- aCCGCgu--GCCCUU------AGGGC-GG--AGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 68133 0.72 0.336828
Target:  5'- cGGCGCgcauACGGGuuUCCCGCagUCaacgCCCg -3'
miRNA:   3'- aCCGCG----UGCCCuuAGGGCGg-AGa---GGG- -5'
32073 5' -60.6 NC_007016.1 + 39104 0.71 0.375227
Target:  5'- uUGGCGa--GGGAGUCCUGCCcgUCcgccaccgcgUCCCg -3'
miRNA:   3'- -ACCGCgugCCCUUAGGGCGG--AG----------AGGG- -5'
32073 5' -60.6 NC_007016.1 + 82911 0.71 0.399645
Target:  5'- aGGCGacaACGgcuGGAGuUCCUGCCgCUCCCu -3'
miRNA:   3'- aCCGCg--UGC---CCUU-AGGGCGGaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 109869 0.71 0.416478
Target:  5'- uUGGCGUuCGuGGAGUUgaaCGCCUCUUCUa -3'
miRNA:   3'- -ACCGCGuGC-CCUUAGg--GCGGAGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 20127 0.7 0.459483
Target:  5'- gGGCcccugcugcuucaGCugGGGAGgacCCCGCgucCUUUCCCg -3'
miRNA:   3'- aCCG-------------CGugCCCUUa--GGGCG---GAGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 10434 0.7 0.469459
Target:  5'- cUGGCGCGCGaGAAaCCCuCCaUCUCCg -3'
miRNA:   3'- -ACCGCGUGCcCUUaGGGcGG-AGAGGg -5'
32073 5' -60.6 NC_007016.1 + 108521 0.69 0.482314
Target:  5'- aGGCGCAcggugcacacCGGGAccgcCCCGCCUUUagcguauacgggagcCCCg -3'
miRNA:   3'- aCCGCGU----------GCCCUua--GGGCGGAGA---------------GGG- -5'
32073 5' -60.6 NC_007016.1 + 118865 0.69 0.485091
Target:  5'- gGGCGCGgGGGGcgCgccgguugcuguugCCGCUcCUCCCc -3'
miRNA:   3'- aCCGCGUgCCCUuaG--------------GGCGGaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 129908 0.69 0.497211
Target:  5'- cGGCgGCGCGGGGccgcggccgccAUCUugCGCCcggggcgagggUCUCCCg -3'
miRNA:   3'- aCCG-CGUGCCCU-----------UAGG--GCGG-----------AGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 20583 0.68 0.54499
Target:  5'- -cGCGCACGGG--UCCCGCgC-CUUCUu -3'
miRNA:   3'- acCGCGUGCCCuuAGGGCG-GaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 947 0.68 0.554734
Target:  5'- cGGCaGCuaaGGGucgCCUGCCUUcuUCCCa -3'
miRNA:   3'- aCCG-CGug-CCCuuaGGGCGGAG--AGGG- -5'
32073 5' -60.6 NC_007016.1 + 130032 0.68 0.564528
Target:  5'- gGGCGcCugGGGGccCCCGCCgggCgCCg -3'
miRNA:   3'- aCCGC-GugCCCUuaGGGCGGagaG-GG- -5'
32073 5' -60.6 NC_007016.1 + 130493 0.68 0.584245
Target:  5'- aGGCGCccCGGGc--CCCaGCCcccCUCCCg -3'
miRNA:   3'- aCCGCGu-GCCCuuaGGG-CGGa--GAGGG- -5'
32073 5' -60.6 NC_007016.1 + 70734 0.67 0.60111
Target:  5'- gGGCGCugcGCGGGAccucgggcguacguGUcagaCCCGCgC-CUCCCu -3'
miRNA:   3'- aCCGCG---UGCCCU--------------UA----GGGCG-GaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 56559 0.67 0.604094
Target:  5'- aGGCGCAguUGGGAcuUCCCGUacaggaaacUUCCCg -3'
miRNA:   3'- aCCGCGU--GCCCUu-AGGGCGga-------GAGGG- -5'
32073 5' -60.6 NC_007016.1 + 82922 0.67 0.604094
Target:  5'- cGGaCGCACGGGGGaggcuggaCCGCCU-UCCg -3'
miRNA:   3'- aCC-GCGUGCCCUUag------GGCGGAgAGGg -5'
32073 5' -60.6 NC_007016.1 + 16597 0.67 0.608075
Target:  5'- cGGCGCGCGuGGcc-CCCGgguucgugcuagacuCCUCUCgCCc -3'
miRNA:   3'- aCCGCGUGC-CCuuaGGGC---------------GGAGAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.