Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32073 | 5' | -60.6 | NC_007016.1 | + | 820 | 0.66 | 0.683704 |
Target: 5'- cGGCGgucCugGGGAgggcucggGUCCCGuguCCUCguguggCCCu -3' miRNA: 3'- aCCGC---GugCCCU--------UAGGGC---GGAGa-----GGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 947 | 0.68 | 0.554734 |
Target: 5'- cGGCaGCuaaGGGucgCCUGCCUUcuUCCCa -3' miRNA: 3'- aCCG-CGug-CCCuuaGGGCGGAG--AGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 10434 | 0.7 | 0.469459 |
Target: 5'- cUGGCGCGCGaGAAaCCCuCCaUCUCCg -3' miRNA: 3'- -ACCGCGUGCcCUUaGGGcGG-AGAGGg -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 13346 | 0.66 | 0.713106 |
Target: 5'- gGGgGCagGCGGGAugAUCCCGgUCacgaUCCCg -3' miRNA: 3'- aCCgCG--UGCCCU--UAGGGC-GGag--AGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 13403 | 0.67 | 0.624021 |
Target: 5'- cGGCGCGCGcGGAGaCgUGCugCUCgCCCa -3' miRNA: 3'- aCCGCGUGC-CCUUaGgGCG--GAGaGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 13518 | 0.74 | 0.254891 |
Target: 5'- cGGCGggaACGGGAucgugaccgggaucAUCCCGCCUgCcCCCg -3' miRNA: 3'- aCCGCg--UGCCCU--------------UAGGGCGGA-GaGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 14267 | 1.12 | 0.000646 |
Target: 5'- gUGGCGCACGGGAAUCCCGCCUCUCCCa -3' miRNA: 3'- -ACCGCGUGCCCUUAGGGCGGAGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 16436 | 0.66 | 0.673812 |
Target: 5'- gGGC-CACGGGGG-CUaCGCCaaaauccgUCUCCCc -3' miRNA: 3'- aCCGcGUGCCCUUaGG-GCGG--------AGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 16597 | 0.67 | 0.608075 |
Target: 5'- cGGCGCGCGuGGcc-CCCGgguucgugcuagacuCCUCUCgCCc -3' miRNA: 3'- aCCGCGUGC-CCuuaGGGC---------------GGAGAG-GG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 17945 | 0.72 | 0.336828 |
Target: 5'- aGGCGaagcCGGGAAaccucuUCCCGaCCagUCUCCCg -3' miRNA: 3'- aCCGCgu--GCCCUU------AGGGC-GG--AGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 20127 | 0.7 | 0.459483 |
Target: 5'- gGGCcccugcugcuucaGCugGGGAGgacCCCGCgucCUUUCCCg -3' miRNA: 3'- aCCG-------------CGugCCCUUa--GGGCG---GAGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 20583 | 0.68 | 0.54499 |
Target: 5'- -cGCGCACGGG--UCCCGCgC-CUUCUu -3' miRNA: 3'- acCGCGUGCCCuuAGGGCG-GaGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 39104 | 0.71 | 0.375227 |
Target: 5'- uUGGCGa--GGGAGUCCUGCCcgUCcgccaccgcgUCCCg -3' miRNA: 3'- -ACCGCgugCCCUUAGGGCGG--AG----------AGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 53151 | 0.66 | 0.713106 |
Target: 5'- --uCGCugGGGAG-CuuGuCCUCUCCg -3' miRNA: 3'- accGCGugCCCUUaGggC-GGAGAGGg -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 56559 | 0.67 | 0.604094 |
Target: 5'- aGGCGCAguUGGGAcuUCCCGUacaggaaacUUCCCg -3' miRNA: 3'- aCCGCGU--GCCCUu-AGGGCGga-------GAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 68133 | 0.72 | 0.336828 |
Target: 5'- cGGCGCgcauACGGGuuUCCCGCagUCaacgCCCg -3' miRNA: 3'- aCCGCG----UGCCCuuAGGGCGg-AGa---GGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 70734 | 0.67 | 0.60111 |
Target: 5'- gGGCGCugcGCGGGAccucgggcguacguGUcagaCCCGCgC-CUCCCu -3' miRNA: 3'- aCCGCG---UGCCCU--------------UA----GGGCG-GaGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 82911 | 0.71 | 0.399645 |
Target: 5'- aGGCGacaACGgcuGGAGuUCCUGCCgCUCCCu -3' miRNA: 3'- aCCGCg--UGC---CCUU-AGGGCGGaGAGGG- -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 82922 | 0.67 | 0.604094 |
Target: 5'- cGGaCGCACGGGGGaggcuggaCCGCCU-UCCg -3' miRNA: 3'- aCC-GCGUGCCCUUag------GGCGGAgAGGg -5' |
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32073 | 5' | -60.6 | NC_007016.1 | + | 84388 | 0.66 | 0.653938 |
Target: 5'- cGG-GCGCGGGAugcUUCaCGCUUUUCCa -3' miRNA: 3'- aCCgCGUGCCCUu--AGG-GCGGAGAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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