Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32075 | 3' | -61.7 | NC_007016.1 | + | 119800 | 0.66 | 0.645079 |
Target: 5'- cGUgGCGCgGCCGCaccaGCCUCCg-- -3' miRNA: 3'- -CGgCGCGgCGGCGgaacUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 6974 | 0.66 | 0.645079 |
Target: 5'- gGCagGCGCCGUgGCg--GugUUCCUGAa -3' miRNA: 3'- -CGg-CGCGGCGgCGgaaCugGAGGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 36112 | 0.66 | 0.635146 |
Target: 5'- aCCGaGCCGcCCGCCUUGGCgCgUUUGAc -3' miRNA: 3'- cGGCgCGGC-GGCGGAACUG-GaGGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 115456 | 0.66 | 0.635146 |
Target: 5'- cCCGCGCC-CgGCUcggugUGACCUCCc-- -3' miRNA: 3'- cGGCGCGGcGgCGGa----ACUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 123615 | 0.66 | 0.61528 |
Target: 5'- uGCgGUGCCGUCgaggccaccgGCCgUGGCCgcCCUGAu -3' miRNA: 3'- -CGgCGCGGCGG----------CGGaACUGGa-GGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 78743 | 0.66 | 0.614288 |
Target: 5'- aUCGCGCCcaauagGCgCGCCUUGGCCUggcacagCCUa- -3' miRNA: 3'- cGGCGCGG------CG-GCGGAACUGGA-------GGAcu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 116591 | 0.66 | 0.605362 |
Target: 5'- aGCCGCGCCGCuuggCGgCgcGGCCggUUCUGGg -3' miRNA: 3'- -CGGCGCGGCG----GCgGaaCUGG--AGGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130375 | 0.66 | 0.605362 |
Target: 5'- aGCCgcGCGCCGCgGCUUguggGGCC-CCgGGc -3' miRNA: 3'- -CGG--CGCGGCGgCGGAa---CUGGaGGaCU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 106471 | 0.66 | 0.595462 |
Target: 5'- gGCUcCGCCGCCccgagcguuGCCccggUGGCCUCCa-- -3' miRNA: 3'- -CGGcGCGGCGG---------CGGa---ACUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130327 | 0.67 | 0.585588 |
Target: 5'- cGCgGCGCCGCCGggcucggccggaCCggGGCgCUCCcggGAg -3' miRNA: 3'- -CGgCGCGGCGGC------------GGaaCUG-GAGGa--CU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 117462 | 0.67 | 0.575745 |
Target: 5'- gGCCGUgaggguugcgGCCGaaaCGCCgaUGGCCUCCg-- -3' miRNA: 3'- -CGGCG----------CGGCg--GCGGa-ACUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 102656 | 0.67 | 0.575745 |
Target: 5'- aGCCGUuCgGCCGCCgagaugcUGGCCUCUa-- -3' miRNA: 3'- -CGGCGcGgCGGCGGa------ACUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 16724 | 0.67 | 0.575745 |
Target: 5'- uCCGCGUCGCCGCCggaauCC-CgUGGg -3' miRNA: 3'- cGGCGCGGCGGCGGaacu-GGaGgACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 81819 | 0.67 | 0.56594 |
Target: 5'- cGCCGCGUgcaCGCUaauccaaaCCUUGuccaaguuACCUCCUGAg -3' miRNA: 3'- -CGGCGCG---GCGGc-------GGAAC--------UGGAGGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 20695 | 0.67 | 0.56594 |
Target: 5'- cGCCGUGCuCGCCGC---GGCCgUCCgGGg -3' miRNA: 3'- -CGGCGCG-GCGGCGgaaCUGG-AGGaCU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130251 | 0.67 | 0.560078 |
Target: 5'- uGCCGgGCgGCCGCCgcccggcauggcgGuCCUCCg-- -3' miRNA: 3'- -CGGCgCGgCGGCGGaa-----------CuGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 117396 | 0.67 | 0.546467 |
Target: 5'- gGCCGUGCUGUgGCUuuUUGACCggCCg-- -3' miRNA: 3'- -CGGCGCGGCGgCGG--AACUGGa-GGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 22648 | 0.68 | 0.498829 |
Target: 5'- aCCgGCGCCGCCGCgUggcGCCcccugCCUGGg -3' miRNA: 3'- cGG-CGCGGCGGCGgAac-UGGa----GGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130034 | 0.68 | 0.480289 |
Target: 5'- cCCGCgGCCGCCGCCcccGGCCgccCCg-- -3' miRNA: 3'- cGGCG-CGGCGGCGGaa-CUGGa--GGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 23032 | 0.68 | 0.480289 |
Target: 5'- cGCUGCGCCcaaucggcGCCGCCgguccGCCaUCUUGAc -3' miRNA: 3'- -CGGCGCGG--------CGGCGGaac--UGG-AGGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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