Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32075 | 3' | -61.7 | NC_007016.1 | + | 117462 | 0.67 | 0.575745 |
Target: 5'- gGCCGUgaggguugcgGCCGaaaCGCCgaUGGCCUCCg-- -3' miRNA: 3'- -CGGCG----------CGGCg--GCGGa-ACUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 119208 | 0.69 | 0.426828 |
Target: 5'- cGCCGgGCCGUCucgGCCagGACCcccguuUCCUGGc -3' miRNA: 3'- -CGGCgCGGCGG---CGGaaCUGG------AGGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 119800 | 0.66 | 0.645079 |
Target: 5'- cGUgGCGCgGCCGCaccaGCCUCCg-- -3' miRNA: 3'- -CGgCGCGgCGGCGgaacUGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 121222 | 0.72 | 0.31705 |
Target: 5'- gGCCGCGCCGagGCCaa-ACCUCCUa- -3' miRNA: 3'- -CGGCGCGGCggCGGaacUGGAGGAcu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 123615 | 0.66 | 0.61528 |
Target: 5'- uGCgGUGCCGUCgaggccaccgGCCgUGGCCgcCCUGAu -3' miRNA: 3'- -CGgCGCGGCGG----------CGGaACUGGa-GGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130015 | 0.76 | 0.167989 |
Target: 5'- cGCCggGCGCCGCCGCUaggGGCCcucgCCUGGc -3' miRNA: 3'- -CGG--CGCGGCGGCGGaa-CUGGa---GGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130034 | 0.68 | 0.480289 |
Target: 5'- cCCGCgGCCGCCGCCcccGGCCgccCCg-- -3' miRNA: 3'- cGGCG-CGGCGGCGGaa-CUGGa--GGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130050 | 0.81 | 0.074565 |
Target: 5'- cCCGCGCCGCCGCC--GGCCgggcgCCUGGg -3' miRNA: 3'- cGGCGCGGCGGCGGaaCUGGa----GGACU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130251 | 0.67 | 0.560078 |
Target: 5'- uGCCGgGCgGCCGCCgcccggcauggcgGuCCUCCg-- -3' miRNA: 3'- -CGGCgCGgCGGCGGaa-----------CuGGAGGacu -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130327 | 0.67 | 0.585588 |
Target: 5'- cGCgGCGCCGCCGggcucggccggaCCggGGCgCUCCcggGAg -3' miRNA: 3'- -CGgCGCGGCGGC------------GGaaCUG-GAGGa--CU- -5' |
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32075 | 3' | -61.7 | NC_007016.1 | + | 130375 | 0.66 | 0.605362 |
Target: 5'- aGCCgcGCGCCGCgGCUUguggGGCC-CCgGGc -3' miRNA: 3'- -CGG--CGCGGCGgCGGAa---CUGGaGGaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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