miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32076 3' -53.4 NC_007016.1 + 61194 0.66 0.968505
Target:  5'- cGUGuGCagUCCCC-CAccAC-CCGCGGg -3'
miRNA:   3'- -CGCuCGaaAGGGGuGUu-UGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 19481 0.66 0.968505
Target:  5'- uCGAGUgccagCgCCGCGAGUUUCGCGGg -3'
miRNA:   3'- cGCUCGaaa--GgGGUGUUUGAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 33901 0.66 0.965314
Target:  5'- aCGAGUUUUCCgUCAuaaauugcacCAGACUgCGUGGa -3'
miRNA:   3'- cGCUCGAAAGG-GGU----------GUUUGAgGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 16551 0.66 0.965314
Target:  5'- uGCGuGGCccucaucgCCCCACGgGAUUCCgGCGGc -3'
miRNA:   3'- -CGC-UCGaaa-----GGGGUGU-UUGAGG-CGCC- -5'
32076 3' -53.4 NC_007016.1 + 102357 0.66 0.963295
Target:  5'- cGCGGGUcguucuaaacucgUCCCCACcguggccuguugAAGgUCUGCGGa -3'
miRNA:   3'- -CGCUCGaa-----------AGGGGUG------------UUUgAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 115852 0.66 0.961903
Target:  5'- aUGGGCcuauuuggUgCCCAUAAGCgggCCGUGGg -3'
miRNA:   3'- cGCUCGaa------AgGGGUGUUUGa--GGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 21810 0.66 0.958266
Target:  5'- gGUGGauuauGCcUUUCCCAUggGCUCCaugaGCGGa -3'
miRNA:   3'- -CGCU-----CGaAAGGGGUGuuUGAGG----CGCC- -5'
32076 3' -53.4 NC_007016.1 + 101019 0.66 0.958266
Target:  5'- cGCGGGCg--CCCUgauagGCAcuucucggAAC-CCGCGGu -3'
miRNA:   3'- -CGCUCGaaaGGGG-----UGU--------UUGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 27386 0.66 0.954398
Target:  5'- cGCGAGUc--CCCCGCGAg--CCGUGa -3'
miRNA:   3'- -CGCUCGaaaGGGGUGUUugaGGCGCc -5'
32076 3' -53.4 NC_007016.1 + 4880 0.66 0.954398
Target:  5'- uGCGAGUUUgCCUgGCGAAC-CUGCa- -3'
miRNA:   3'- -CGCUCGAAaGGGgUGUUUGaGGCGcc -5'
32076 3' -53.4 NC_007016.1 + 85644 0.67 0.945952
Target:  5'- -aGGGCUcUCCCgCGCAGGCUgcaCC-CGGa -3'
miRNA:   3'- cgCUCGAaAGGG-GUGUUUGA---GGcGCC- -5'
32076 3' -53.4 NC_007016.1 + 90863 0.67 0.941368
Target:  5'- uGCG-GCUUUCCuuCCGCGuucGACUcguccCCGUGGu -3'
miRNA:   3'- -CGCuCGAAAGG--GGUGU---UUGA-----GGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 92873 0.67 0.930941
Target:  5'- gGCGAuGCUgcgCCCCAgcuGCUCCcaucuuuccaaggGCGGg -3'
miRNA:   3'- -CGCU-CGAaa-GGGGUguuUGAGG-------------CGCC- -5'
32076 3' -53.4 NC_007016.1 + 20862 0.67 0.92614
Target:  5'- cGCGGcGCgugCCCCG--GACggCCGCGGc -3'
miRNA:   3'- -CGCU-CGaaaGGGGUguUUGa-GGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 65242 0.68 0.914752
Target:  5'- gGCGAGCgg-CCCCAC--ACUgCUGCu- -3'
miRNA:   3'- -CGCUCGaaaGGGGUGuuUGA-GGCGcc -5'
32076 3' -53.4 NC_007016.1 + 66002 0.68 0.914752
Target:  5'- aCGAGCUguuuaCCUUACAAACUCCaCGu -3'
miRNA:   3'- cGCUCGAaa---GGGGUGUUUGAGGcGCc -5'
32076 3' -53.4 NC_007016.1 + 68123 0.68 0.914752
Target:  5'- aCGGGU--UUCCCGCAGucaacGC-CCGCGGa -3'
miRNA:   3'- cGCUCGaaAGGGGUGUU-----UGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 22401 0.68 0.902383
Target:  5'- cGCGGGCg--UUCCGCGugUUuuGCGGg -3'
miRNA:   3'- -CGCUCGaaaGGGGUGUuuGAggCGCC- -5'
32076 3' -53.4 NC_007016.1 + 101953 0.68 0.902383
Target:  5'- cGCGGcCUUUCCCUu----UUCCGCGGu -3'
miRNA:   3'- -CGCUcGAAAGGGGuguuuGAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 17936 0.68 0.902383
Target:  5'- uGCGAGUUcacgCgCCGCGAACgaCGCGGu -3'
miRNA:   3'- -CGCUCGAaa--GgGGUGUUUGagGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.