miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32077 5' -61.3 NC_007016.1 + 5256 0.67 0.61528
Target:  5'- aGGCgUCAauacucGGCAacaGGCCAuCUGGAUCuGGCg -3'
miRNA:   3'- -CCG-AGU------CCGU---CCGGU-GGCCUAG-CCGg -5'
32077 5' -61.3 NC_007016.1 + 7939 0.7 0.401454
Target:  5'- cGgaCAGGUAaGCCACCGGcgUGGCa -3'
miRNA:   3'- cCgaGUCCGUcCGGUGGCCuaGCCGg -5'
32077 5' -61.3 NC_007016.1 + 12075 0.69 0.489518
Target:  5'- cGGCaauauaCGGGCgGCCGGuGUCGGCCa -3'
miRNA:   3'- -CCGagucc-GUCCGgUGGCC-UAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 13259 0.66 0.673804
Target:  5'- cGGCUCuGGCGGGCgGCaaguacaggcguaUGGGUgUGGUUa -3'
miRNA:   3'- -CCGAGuCCGUCCGgUG-------------GCCUA-GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 14769 0.66 0.635146
Target:  5'- uGGCcaaaauUCAGGcCAGGCgCGuccuaaCGGA-CGGCCa -3'
miRNA:   3'- -CCG------AGUCC-GUCCG-GUg-----GCCUaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 15263 0.66 0.674791
Target:  5'- cGGUUUA--CGGGuUCACCGGggUGGCCa -3'
miRNA:   3'- -CCGAGUccGUCC-GGUGGCCuaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 16908 0.66 0.655003
Target:  5'- cGGUUaCAGGUgAGGCCGuuuUCGGAUgacgCGGCa -3'
miRNA:   3'- -CCGA-GUCCG-UCCGGU---GGCCUA----GCCGg -5'
32077 5' -61.3 NC_007016.1 + 17033 1.13 0.000411
Target:  5'- aGGCUCAGGCAGGCCACCGGAUCGGCCg -3'
miRNA:   3'- -CCGAGUCCGUCCGGUGGCCUAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 17260 0.66 0.674791
Target:  5'- gGGUgggCAGGaCGGGU--CCGGAcUGGCCc -3'
miRNA:   3'- -CCGa--GUCC-GUCCGguGGCCUaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 20915 0.73 0.283346
Target:  5'- gGGCg-GGGuCAGGCCACaaGGcgCGGCCc -3'
miRNA:   3'- -CCGagUCC-GUCCGGUGg-CCuaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 22782 0.68 0.51768
Target:  5'- cGGC-CAccuggcGGCGGGCCagagacgcgagcACCGcGAgCGGCCg -3'
miRNA:   3'- -CCGaGU------CCGUCCGG------------UGGC-CUaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 26212 0.68 0.523392
Target:  5'- cGGCggGGGCuGGaGCCACCGGcugcguggcaaGGCCg -3'
miRNA:   3'- -CCGagUCCG-UC-CGGUGGCCuag--------CCGG- -5'
32077 5' -61.3 NC_007016.1 + 31531 0.7 0.426828
Target:  5'- -uUUCGuGCAacGGCCGCCGGcAUCGGUCg -3'
miRNA:   3'- ccGAGUcCGU--CCGGUGGCC-UAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 37781 0.67 0.592497
Target:  5'- uGGC-CAGGCAGcaaaaaauuGCCAguugaguuuugaaaUCGGAaUUGGCCg -3'
miRNA:   3'- -CCGaGUCCGUC---------CGGU--------------GGCCU-AGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 47249 0.7 0.409805
Target:  5'- ---aCAGGUAcGCgACCGGAUCGGaCCa -3'
miRNA:   3'- ccgaGUCCGUcCGgUGGCCUAGCC-GG- -5'
32077 5' -61.3 NC_007016.1 + 48361 0.68 0.549375
Target:  5'- gGGC-CAGGCAcgcgacggauguccuGGUUACCGGAcacguaaaucucuUgGGCCu -3'
miRNA:   3'- -CCGaGUCCGU---------------CCGGUGGCCU-------------AgCCGG- -5'
32077 5' -61.3 NC_007016.1 + 63292 0.72 0.31705
Target:  5'- cGCUCAcGC-GGCCACCGGuucucccUGGCCg -3'
miRNA:   3'- cCGAGUcCGuCCGGUGGCCua-----GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 68055 0.66 0.66392
Target:  5'- uGCgauaugCGGGCcggGGGCCG-CGGAUguugaacCGGCCa -3'
miRNA:   3'- cCGa-----GUCCG---UCCGGUgGCCUA-------GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 71308 0.67 0.585588
Target:  5'- aGGC-CAaaaucGC-GGCCGCCGuuUCGGCCu -3'
miRNA:   3'- -CCGaGUc----CGuCCGGUGGCcuAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 72736 0.66 0.655003
Target:  5'- gGGCgggaguugagCGGGUGGGUUGCgGGAagcgUGGCCa -3'
miRNA:   3'- -CCGa---------GUCCGUCCGGUGgCCUa---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.