Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32077 | 5' | -61.3 | NC_007016.1 | + | 116136 | 0.66 | 0.635146 |
Target: 5'- uGGC-CGGGCAGag-GCCGGc-CGGCCa -3' miRNA: 3'- -CCGaGUCCGUCcggUGGCCuaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 26212 | 0.68 | 0.523392 |
Target: 5'- cGGCggGGGCuGGaGCCACCGGcugcguggcaaGGCCg -3' miRNA: 3'- -CCGagUCCG-UC-CGGUGGCCuag--------CCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 123409 | 0.68 | 0.527213 |
Target: 5'- cGGCcaUCAGcgcccuggggaGCGGGgCGCCGGGggcgaucagggCGGCCa -3' miRNA: 3'- -CCG--AGUC-----------CGUCCgGUGGCCUa----------GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 130343 | 0.68 | 0.527213 |
Target: 5'- gGGCUgGGGCccGGGgCGCCucggcgGGGcCGGCCc -3' miRNA: 3'- -CCGAgUCCG--UCCgGUGG------CCUaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 48361 | 0.68 | 0.549375 |
Target: 5'- gGGC-CAGGCAcgcgacggauguccuGGUUACCGGAcacguaaaucucuUgGGCCu -3' miRNA: 3'- -CCGaGUCCGU---------------CCGGUGGCCU-------------AgCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 129886 | 0.67 | 0.56594 |
Target: 5'- gGGCcccCAGGCGcccggccggcGGCgGCgCGGGgccgCGGCCg -3' miRNA: 3'- -CCGa--GUCCGU----------CCGgUG-GCCUa---GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 37781 | 0.67 | 0.592497 |
Target: 5'- uGGC-CAGGCAGcaaaaaauuGCCAguugaguuuugaaaUCGGAaUUGGCCg -3' miRNA: 3'- -CCGaGUCCGUC---------CGGU--------------GGCCU-AGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 5256 | 0.67 | 0.61528 |
Target: 5'- aGGCgUCAauacucGGCAacaGGCCAuCUGGAUCuGGCg -3' miRNA: 3'- -CCG-AGU------CCGU---CCGGU-GGCCUAG-CCGg -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 14769 | 0.66 | 0.635146 |
Target: 5'- uGGCcaaaauUCAGGcCAGGCgCGuccuaaCGGA-CGGCCa -3' miRNA: 3'- -CCG------AGUCC-GUCCG-GUg-----GCCUaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 22782 | 0.68 | 0.51768 |
Target: 5'- cGGC-CAccuggcGGCGGGCCagagacgcgagcACCGcGAgCGGCCg -3' miRNA: 3'- -CCGaGU------CCGUCCGG------------UGGC-CUaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 122776 | 0.68 | 0.506334 |
Target: 5'- aGGC-CAGGUGGcGCCcguCCGGugacgugauggCGGCCa -3' miRNA: 3'- -CCGaGUCCGUC-CGGu--GGCCua---------GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 12075 | 0.69 | 0.489518 |
Target: 5'- cGGCaauauaCGGGCgGCCGGuGUCGGCCa -3' miRNA: 3'- -CCGagucc-GUCCGgUGGCC-UAGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 130025 | 0.73 | 0.264521 |
Target: 5'- cGGCcCGGGCccgcGGCCGCCGccccCGGCCg -3' miRNA: 3'- -CCGaGUCCGu---CCGGUGGCcua-GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 20915 | 0.73 | 0.283346 |
Target: 5'- gGGCg-GGGuCAGGCCACaaGGcgCGGCCc -3' miRNA: 3'- -CCGagUCC-GUCCGGUGg-CCuaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 115350 | 0.73 | 0.29051 |
Target: 5'- cGGCUC-GGCGGGCCAauGGGaaacgucccugccggCGGCCc -3' miRNA: 3'- -CCGAGuCCGUCCGGUggCCUa--------------GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 114149 | 0.7 | 0.392394 |
Target: 5'- cGGCUCcGGguGGCU-CCGGGUgggguggCGGCUc -3' miRNA: 3'- -CCGAGuCCguCCGGuGGCCUA-------GCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 31531 | 0.7 | 0.426828 |
Target: 5'- -uUUCGuGCAacGGCCGCCGGcAUCGGUCg -3' miRNA: 3'- ccGAGUcCGU--CCGGUGGCC-UAGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 81773 | 0.69 | 0.471145 |
Target: 5'- aGGCUgGauGGUuuGGUCACuCGGAcCGGCCg -3' miRNA: 3'- -CCGAgU--CCGu-CCGGUG-GCCUaGCCGG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 114121 | 0.69 | 0.480289 |
Target: 5'- gGGCUCcGGguGGCU-CCGGGUgGGgUg -3' miRNA: 3'- -CCGAGuCCguCCGGuGGCCUAgCCgG- -5' |
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32077 | 5' | -61.3 | NC_007016.1 | + | 130241 | 0.69 | 0.480289 |
Target: 5'- cGGCUCccgaugccGGGC-GGCCGCCGcc-CGGCa -3' miRNA: 3'- -CCGAG--------UCCGuCCGGUGGCcuaGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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