Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32078 | 3' | -55.4 | NC_007016.1 | + | 25870 | 0.66 | 0.872241 |
Target: 5'- gUGCUACGgggUCGCGGCUGGucuucuGGCGCUAg -3' miRNA: 3'- -ACGGUGCg--GGCGUUGAUCu-----UUGCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 26063 | 0.67 | 0.839741 |
Target: 5'- cGCCuauCGCCugauggcaaacagCGCAACUA---GCGCCAg -3' miRNA: 3'- aCGGu--GCGG-------------GCGUUGAUcuuUGCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 40348 | 0.72 | 0.573198 |
Target: 5'- gGCCACGUCUGCGGCaUGG--GCGUCGa -3' miRNA: 3'- aCGGUGCGGGCGUUG-AUCuuUGCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 51666 | 0.69 | 0.748757 |
Target: 5'- cGCCGgggGCCCGCAggcgcguauGCUAGAucaGCCGu -3' miRNA: 3'- aCGGUg--CGGGCGU---------UGAUCUuugCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 59283 | 0.66 | 0.893651 |
Target: 5'- aGgCGCGCCCcCGACgguGAAAcgauCGCCAg -3' miRNA: 3'- aCgGUGCGGGcGUUGau-CUUU----GCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 61996 | 0.67 | 0.823525 |
Target: 5'- cGCCAUaGUuuGaCGACcAGAAACGCCc -3' miRNA: 3'- aCGGUG-CGggC-GUUGaUCUUUGCGGu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 63149 | 0.66 | 0.864647 |
Target: 5'- gGCCGCGUgagCgGCAGCUAGggGagacggauggcgUGCCu -3' miRNA: 3'- aCGGUGCG---GgCGUUGAUCuuU------------GCGGu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 67488 | 0.68 | 0.796605 |
Target: 5'- aGCCAUGauaggucuCCUGCAACauaugAGAcGACGCCAc -3' miRNA: 3'- aCGGUGC--------GGGCGUUGa----UCU-UUGCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 67935 | 0.66 | 0.87961 |
Target: 5'- uUGCCggcACGUCUcgGCAGgUGGAAGCGuCCGc -3' miRNA: 3'- -ACGG---UGCGGG--CGUUgAUCUUUGC-GGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 68085 | 0.66 | 0.900315 |
Target: 5'- cUGCCGagacgUGCCgGCAACUGGGGaacAUGCg- -3' miRNA: 3'- -ACGGU-----GCGGgCGUUGAUCUU---UGCGgu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 91049 | 0.7 | 0.66714 |
Target: 5'- aGCCggagaccgaggACGCCCGCGucuccaacGCUGGAGagcACGCUg -3' miRNA: 3'- aCGG-----------UGCGGGCGU--------UGAUCUU---UGCGGu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 93169 | 0.67 | 0.832145 |
Target: 5'- gGCCGCGCCuaaCGCu-CUcGGuAGGCGCCGu -3' miRNA: 3'- aCGGUGCGG---GCGuuGA-UC-UUUGCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 96401 | 0.69 | 0.738827 |
Target: 5'- aGCCACGUCUGaAGC-GGAGACGCg- -3' miRNA: 3'- aCGGUGCGGGCgUUGaUCUUUGCGgu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 96719 | 0.66 | 0.863875 |
Target: 5'- gGCCAgGCUCGCgAGCUguggacuauccaaAGAAGCGUg- -3' miRNA: 3'- aCGGUgCGGGCG-UUGA-------------UCUUUGCGgu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 98930 | 0.66 | 0.893651 |
Target: 5'- gGCCAaaguacuCCUGCGAUUGGAagAugGCCGc -3' miRNA: 3'- aCGGUgc-----GGGCGUUGAUCU--UugCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 103043 | 0.66 | 0.864647 |
Target: 5'- -aCCAuCGCCguuCGCGAuCUAGGAACGCUc -3' miRNA: 3'- acGGU-GCGG---GCGUU-GAUCUUUGCGGu -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 103269 | 0.66 | 0.872241 |
Target: 5'- cGgCGCGCCuCGCGA-UGGAcucgAugGCCAg -3' miRNA: 3'- aCgGUGCGG-GCGUUgAUCU----UugCGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 103894 | 0.66 | 0.87961 |
Target: 5'- cUGCCGCaCCUGacGCUAGAGGC-CCAg -3' miRNA: 3'- -ACGGUGcGGGCguUGAUCUUUGcGGU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 104415 | 0.66 | 0.893651 |
Target: 5'- cGgCACGCCCaGCGcCUGGGccaGGCGCgCGg -3' miRNA: 3'- aCgGUGCGGG-CGUuGAUCU---UUGCG-GU- -5' |
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32078 | 3' | -55.4 | NC_007016.1 | + | 104571 | 0.71 | 0.604393 |
Target: 5'- cGCCugGCCCagGC-GCUGGGcgUGCCGc -3' miRNA: 3'- aCGGugCGGG--CGuUGAUCUuuGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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