miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 7715 0.67 0.856833
Target:  5'- uUGCCuuACGCCgGUguuacaAACUAucGACGCCGa -3'
miRNA:   3'- -ACGG--UGCGGgCG------UUGAUcuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 7764 0.67 0.848807
Target:  5'- gUGCUAgGCuCCGCGGCgauuGccACGCCGg -3'
miRNA:   3'- -ACGGUgCG-GGCGUUGau--CuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 9783 0.67 0.840575
Target:  5'- cGCgGCGaCCGCGGCaAGcGACGUCAu -3'
miRNA:   3'- aCGgUGCgGGCGUUGaUCuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 9919 0.67 0.856833
Target:  5'- cGCCGCgacgguggcgGUCCGUGGCUccgagGGGGugGCCGg -3'
miRNA:   3'- aCGGUG----------CGGGCGUUGA-----UCUUugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 10778 0.76 0.365674
Target:  5'- -cCCACGCCCGCAGC-AGAcGACGCg- -3'
miRNA:   3'- acGGUGCGGGCGUUGaUCU-UUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 13974 0.84 0.118782
Target:  5'- gUGCCACGCCCcgccuaGCGGCcAGAGAUGCCAg -3'
miRNA:   3'- -ACGGUGCGGG------CGUUGaUCUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 16415 0.68 0.80302
Target:  5'- aGCC-CGCCUGCAgacguuuaagggccACgggGGcuACGCCAa -3'
miRNA:   3'- aCGGuGCGGGCGU--------------UGa--UCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 16731 0.67 0.848807
Target:  5'- cGCCGCGUCCGCGuCgc----CGCCGg -3'
miRNA:   3'- aCGGUGCGGGCGUuGaucuuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 17395 0.66 0.87961
Target:  5'- cGCCGCGCCCugccccgugguGCGAgUAagcuccgccgacGAcGCGCCGc -3'
miRNA:   3'- aCGGUGCGGG-----------CGUUgAU------------CUuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 17407 1.09 0.002486
Target:  5'- gUGCCACGCCCGCAACUAGAAACGCCAg -3'
miRNA:   3'- -ACGGUGCGGGCGUUGAUCUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 17761 0.68 0.814722
Target:  5'- uUGCCACuCgCCGCGAa-AGAAACGCa- -3'
miRNA:   3'- -ACGGUGcG-GGCGUUgaUCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 18210 0.66 0.87961
Target:  5'- cUGCaCGCGUCCGuCAGCgcuaucGGAACGCg- -3'
miRNA:   3'- -ACG-GUGCGGGC-GUUGau----CUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 19218 0.69 0.718684
Target:  5'- cGCgGCGCCCGCGuuuCcGGgcGCGUCGu -3'
miRNA:   3'- aCGgUGCGGGCGUu--GaUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 19792 0.7 0.708492
Target:  5'- gGCCGcCGCCCGCGAUUGuGAGCGa-- -3'
miRNA:   3'- aCGGU-GCGGGCGUUGAUcUUUGCggu -5'
32078 3' -55.4 NC_007016.1 + 20051 0.68 0.768287
Target:  5'- gGUCAgGCCCGUGACgugcgcuauUAGAuACGUCAg -3'
miRNA:   3'- aCGGUgCGGGCGUUG---------AUCUuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 20719 0.66 0.880334
Target:  5'- gGgCACGCgCCGCGGCaaccucggauccgcgAGAAACGCg- -3'
miRNA:   3'- aCgGUGCG-GGCGUUGa--------------UCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 21784 0.67 0.839741
Target:  5'- cGCCGCGCUCGCcguGCUuggccacGGAugacGGCGuCCAu -3'
miRNA:   3'- aCGGUGCGGGCGu--UGA-------UCU----UUGC-GGU- -5'
32078 3' -55.4 NC_007016.1 + 22064 0.68 0.768287
Target:  5'- aGaCACGCCCGUuuuggGACUcGcGACGCCAc -3'
miRNA:   3'- aCgGUGCGGGCG-----UUGAuCuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 22472 0.69 0.75858
Target:  5'- cGCUuuGCuCCGCAcccagGCaGGggGCGCCAc -3'
miRNA:   3'- aCGGugCG-GGCGU-----UGaUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 22569 0.71 0.635781
Target:  5'- gUGCCGaccccgGCCCGCAaaacACgcGGAACGCCc -3'
miRNA:   3'- -ACGGUg-----CGGGCGU----UGauCUUUGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.