miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 17407 1.09 0.002486
Target:  5'- gUGCCACGCCCGCAACUAGAAACGCCAg -3'
miRNA:   3'- -ACGGUGCGGGCGUUGAUCUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 13974 0.84 0.118782
Target:  5'- gUGCCACGCCCcgccuaGCGGCcAGAGAUGCCAg -3'
miRNA:   3'- -ACGGUGCGGG------CGUUGaUCUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 130375 0.76 0.349493
Target:  5'- aGCCGCGCgCCGCGGCUuguGggGCcCCGg -3'
miRNA:   3'- aCGGUGCG-GGCGUUGAu--CuuUGcGGU- -5'
32078 3' -55.4 NC_007016.1 + 10778 0.76 0.365674
Target:  5'- -cCCACGCCCGCAGC-AGAcGACGCg- -3'
miRNA:   3'- acGGUGCGGGCGUUGaUCU-UUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 115794 0.75 0.399554
Target:  5'- cGCCACcauguGCCCGCAAUUuGggGCGCgGg -3'
miRNA:   3'- aCGGUG-----CGGGCGUUGAuCuuUGCGgU- -5'
32078 3' -55.4 NC_007016.1 + 130139 0.74 0.48264
Target:  5'- cGCCGgGcCCCGcCGACUcccGGGAGCGCCc -3'
miRNA:   3'- aCGGUgC-GGGC-GUUGA---UCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 130015 0.73 0.532244
Target:  5'- cGCCGgGCgCCGCcGCUAGGggcccucgccuGGCGCCGc -3'
miRNA:   3'- aCGGUgCG-GGCGuUGAUCU-----------UUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 119664 0.72 0.562877
Target:  5'- cGCCACGCCCccuaccGCGACU----GCGCCc -3'
miRNA:   3'- aCGGUGCGGG------CGUUGAucuuUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 40348 0.72 0.573198
Target:  5'- gGCCACGUCUGCGGCaUGG--GCGUCGa -3'
miRNA:   3'- aCGGUGCGGGCGUUG-AUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 104571 0.71 0.604393
Target:  5'- cGCCugGCCCagGC-GCUGGGcgUGCCGc -3'
miRNA:   3'- aCGGugCGGG--CGuUGAUCUuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116831 0.71 0.62531
Target:  5'- gGCCACG-UCGCGuCUGGAGACgGCCu -3'
miRNA:   3'- aCGGUGCgGGCGUuGAUCUUUG-CGGu -5'
32078 3' -55.4 NC_007016.1 + 22569 0.71 0.635781
Target:  5'- gUGCCGaccccgGCCCGCAaaacACgcGGAACGCCc -3'
miRNA:   3'- -ACGGUg-----CGGGCGU----UGauCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 91049 0.7 0.66714
Target:  5'- aGCCggagaccgaggACGCCCGCGucuccaacGCUGGAGagcACGCUg -3'
miRNA:   3'- aCGG-----------UGCGGGCGU--------UGAUCUU---UGCGGu -5'
32078 3' -55.4 NC_007016.1 + 19792 0.7 0.708492
Target:  5'- gGCCGcCGCCCGCGAUUGuGAGCGa-- -3'
miRNA:   3'- aCGGU-GCGGGCGUUGAUcUUUGCggu -5'
32078 3' -55.4 NC_007016.1 + 19218 0.69 0.718684
Target:  5'- cGCgGCGCCCGCGuuuCcGGgcGCGUCGu -3'
miRNA:   3'- aCGgUGCGGGCGUu--GaUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 117456 0.69 0.7288
Target:  5'- gGCCGCGgCCGUGaggguuGCggccGAAACGCCGa -3'
miRNA:   3'- aCGGUGCgGGCGU------UGau--CUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 96401 0.69 0.738827
Target:  5'- aGCCACGUCUGaAGC-GGAGACGCg- -3'
miRNA:   3'- aCGGUGCGGGCgUUGaUCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 116591 0.69 0.747769
Target:  5'- aGCCGCGCCgcuuggcggCGCGGCcgguucUGGGAaauguccGCGCCAg -3'
miRNA:   3'- aCGGUGCGG---------GCGUUG------AUCUU-------UGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 51666 0.69 0.748757
Target:  5'- cGCCGgggGCCCGCAggcgcguauGCUAGAucaGCCGu -3'
miRNA:   3'- aCGGUg--CGGGCGU---------UGAUCUuugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 22472 0.69 0.75858
Target:  5'- cGCUuuGCuCCGCAcccagGCaGGggGCGCCAc -3'
miRNA:   3'- aCGGugCG-GGCGU-----UGaUCuuUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.