miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 63149 0.66 0.864647
Target:  5'- gGCCGCGUgagCgGCAGCUAGggGagacggauggcgUGCCu -3'
miRNA:   3'- aCGGUGCG---GgCGUUGAUCuuU------------GCGGu -5'
32078 3' -55.4 NC_007016.1 + 16415 0.68 0.80302
Target:  5'- aGCC-CGCCUGCAgacguuuaagggccACgggGGcuACGCCAa -3'
miRNA:   3'- aCGGuGCGGGCGU--------------UGa--UCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 61996 0.67 0.823525
Target:  5'- cGCCAUaGUuuGaCGACcAGAAACGCCc -3'
miRNA:   3'- aCGGUG-CGggC-GUUGaUCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 93169 0.67 0.832145
Target:  5'- gGCCGCGCCuaaCGCu-CUcGGuAGGCGCCGu -3'
miRNA:   3'- aCGGUGCGG---GCGuuGA-UC-UUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 21784 0.67 0.839741
Target:  5'- cGCCGCGCUCGCcguGCUuggccacGGAugacGGCGuCCAu -3'
miRNA:   3'- aCGGUGCGGGCGu--UGA-------UCU----UUGC-GGU- -5'
32078 3' -55.4 NC_007016.1 + 9783 0.67 0.840575
Target:  5'- cGCgGCGaCCGCGGCaAGcGACGUCAu -3'
miRNA:   3'- aCGgUGCgGGCGUUGaUCuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 7764 0.67 0.848807
Target:  5'- gUGCUAgGCuCCGCGGCgauuGccACGCCGg -3'
miRNA:   3'- -ACGGUgCG-GGCGUUGau--CuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 7715 0.67 0.856833
Target:  5'- uUGCCuuACGCCgGUguuacaAACUAucGACGCCGa -3'
miRNA:   3'- -ACGG--UGCGGgCG------UUGAUcuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 96719 0.66 0.863875
Target:  5'- gGCCAgGCUCGCgAGCUguggacuauccaaAGAAGCGUg- -3'
miRNA:   3'- aCGGUgCGGGCG-UUGA-------------UCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 130229 0.68 0.787308
Target:  5'- aGCCGCGgCgCGCGGCUcccGAUGCCGg -3'
miRNA:   3'- aCGGUGCgG-GCGUUGAucuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 20051 0.68 0.768287
Target:  5'- gGUCAgGCCCGUGACgugcgcuauUAGAuACGUCAg -3'
miRNA:   3'- aCGGUgCGGGCGUUG---------AUCUuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 22472 0.69 0.75858
Target:  5'- cGCUuuGCuCCGCAcccagGCaGGggGCGCCAc -3'
miRNA:   3'- aCGGugCG-GGCGU-----UGaUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 130139 0.74 0.48264
Target:  5'- cGCCGgGcCCCGcCGACUcccGGGAGCGCCc -3'
miRNA:   3'- aCGGUgC-GGGC-GUUGA---UCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 119664 0.72 0.562877
Target:  5'- cGCCACGCCCccuaccGCGACU----GCGCCc -3'
miRNA:   3'- aCGGUGCGGG------CGUUGAucuuUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 40348 0.72 0.573198
Target:  5'- gGCCACGUCUGCGGCaUGG--GCGUCGa -3'
miRNA:   3'- aCGGUGCGGGCGUUG-AUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116831 0.71 0.62531
Target:  5'- gGCCACG-UCGCGuCUGGAGACgGCCu -3'
miRNA:   3'- aCGGUGCgGGCGUuGAUCUUUG-CGGu -5'
32078 3' -55.4 NC_007016.1 + 91049 0.7 0.66714
Target:  5'- aGCCggagaccgaggACGCCCGCGucuccaacGCUGGAGagcACGCUg -3'
miRNA:   3'- aCGG-----------UGCGGGCGU--------UGAUCUU---UGCGGu -5'
32078 3' -55.4 NC_007016.1 + 19218 0.69 0.718684
Target:  5'- cGCgGCGCCCGCGuuuCcGGgcGCGUCGu -3'
miRNA:   3'- aCGgUGCGGGCGUu--GaUCuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 117456 0.69 0.7288
Target:  5'- gGCCGCGgCCGUGaggguuGCggccGAAACGCCGa -3'
miRNA:   3'- aCGGUGCgGGCGU------UGau--CUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 51666 0.69 0.748757
Target:  5'- cGCCGgggGCCCGCAggcgcguauGCUAGAucaGCCGu -3'
miRNA:   3'- aCGGUg--CGGGCGU---------UGAUCUuugCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.