miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32079 3' -62.3 NC_007016.1 + 64989 0.66 0.548722
Target:  5'- gUGCUaaGGC-CGCggauuCGGCAGGCACGGc -3'
miRNA:   3'- -ACGAccCCGuGCG-----GCCGUCUGUGCCu -5'
32079 3' -62.3 NC_007016.1 + 130137 0.67 0.529388
Target:  5'- aGCcGGGGgAgGCCGGCGGcgccccGCuCGGGg -3'
miRNA:   3'- aCGaCCCCgUgCGGCCGUC------UGuGCCU- -5'
32079 3' -62.3 NC_007016.1 + 119620 0.67 0.529388
Target:  5'- cGUUGGGGaagcggAgGCC-GCGGAUGCGGAg -3'
miRNA:   3'- aCGACCCCg-----UgCGGcCGUCUGUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 129430 0.67 0.529388
Target:  5'- gGCUGGGGUGaGCUagGGUgaGGGCugGGGu -3'
miRNA:   3'- aCGACCCCGUgCGG--CCG--UCUGugCCU- -5'
32079 3' -62.3 NC_007016.1 + 129386 0.67 0.529388
Target:  5'- gGCUGGGGUGaGCUagGGUgaGGGCugGGGu -3'
miRNA:   3'- aCGACCCCGUgCGG--CCG--UCUGugCCU- -5'
32079 3' -62.3 NC_007016.1 + 129342 0.67 0.529388
Target:  5'- gGCUGGGGUGaGCUagGGUgaGGGCugGGGu -3'
miRNA:   3'- aCGACCCCGUgCGG--CCG--UCUGugCCU- -5'
32079 3' -62.3 NC_007016.1 + 116583 0.67 0.519814
Target:  5'- cGCuUGGcGGCGCgGCCGGUu--CugGGAa -3'
miRNA:   3'- aCG-ACC-CCGUG-CGGCCGucuGugCCU- -5'
32079 3' -62.3 NC_007016.1 + 92717 0.67 0.519814
Target:  5'- aGUUGGaGCGgGCCGGU--GCGCGGGc -3'
miRNA:   3'- aCGACCcCGUgCGGCCGucUGUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 93023 0.67 0.500878
Target:  5'- aGCUGGGGCGCaGCaucGCccaGCAUGGAa -3'
miRNA:   3'- aCGACCCCGUG-CGgc-CGuc-UGUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 26249 0.67 0.491524
Target:  5'- gGCgUGGuGGCuCGCCGGCuguGGGgGCGGc -3'
miRNA:   3'- aCG-ACC-CCGuGCGGCCG---UCUgUGCCu -5'
32079 3' -62.3 NC_007016.1 + 130346 0.67 0.491524
Target:  5'- gGCUcGGGGgGCGUCGG--GGCGCGGc -3'
miRNA:   3'- aCGA-CCCCgUGCGGCCguCUGUGCCu -5'
32079 3' -62.3 NC_007016.1 + 115963 0.68 0.454962
Target:  5'- cGCccGGGGU-CGCCGGCGGGuCACcGAa -3'
miRNA:   3'- aCGa-CCCCGuGCGGCCGUCU-GUGcCU- -5'
32079 3' -62.3 NC_007016.1 + 26142 0.68 0.444281
Target:  5'- aGggGcGGGCACGCacccgcgcggggGGCAGAgGCGGAa -3'
miRNA:   3'- aCgaC-CCCGUGCGg-----------CCGUCUgUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 130344 0.69 0.386563
Target:  5'- gGCUGGGGCccgggGCGCCucGGCGGgGC-CGGc -3'
miRNA:   3'- aCGACCCCG-----UGCGG--CCGUC-UGuGCCu -5'
32079 3' -62.3 NC_007016.1 + 129881 0.7 0.3474
Target:  5'- gGCgGGGGCcCccaggcgcccgGCCGGCGGcgGCGCGGGg -3'
miRNA:   3'- aCGaCCCCGuG-----------CGGCCGUC--UGUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 90025 0.7 0.339915
Target:  5'- -cCUGGGGCGCgGUgGGCuuACACGGGc -3'
miRNA:   3'- acGACCCCGUG-CGgCCGucUGUGCCU- -5'
32079 3' -62.3 NC_007016.1 + 16949 0.71 0.318168
Target:  5'- cGCaGGGGUcCGCCgGGCAGGCuuuCGGu -3'
miRNA:   3'- aCGaCCCCGuGCGG-CCGUCUGu--GCCu -5'
32079 3' -62.3 NC_007016.1 + 71650 0.71 0.304261
Target:  5'- gUGaCUGuGGcGCACaCCGGCAGACACaGAu -3'
miRNA:   3'- -AC-GAC-CC-CGUGcGGCCGUCUGUGcCU- -5'
32079 3' -62.3 NC_007016.1 + 67394 0.71 0.297484
Target:  5'- aGCUGGGGCGguaaaacaacccCGCUacaGGCAGACGCu-- -3'
miRNA:   3'- aCGACCCCGU------------GCGG---CCGUCUGUGccu -5'
32079 3' -62.3 NC_007016.1 + 121078 0.72 0.284284
Target:  5'- aGCUcgGGuGGCACGCCGGUccaguuaacAGACgguGCGGGa -3'
miRNA:   3'- aCGA--CC-CCGUGCGGCCG---------UCUG---UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.