miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32086 5' -59.5 NC_007016.1 + 28294 0.66 0.793074
Target:  5'- gCUGugUGUCgCGaCGUuCGCGCgGUCc -3'
miRNA:   3'- -GACugGCAGgGCaGCAuGCGCGgCGG- -5'
32086 5' -59.5 NC_007016.1 + 130175 0.66 0.784221
Target:  5'- -cGGCCGagCCCGgCGgcgcCGCGCC-CCg -3'
miRNA:   3'- gaCUGGCa-GGGCaGCau--GCGCGGcGG- -5'
32086 5' -59.5 NC_007016.1 + 20403 0.66 0.780643
Target:  5'- -cGGCgGUCCCcaaagcccUGCGCCGCCa -3'
miRNA:   3'- gaCUGgCAGGGcagcau--GCGCGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 81115 0.66 0.775239
Target:  5'- -cGAUUgugGUCCUGUCGUGCGCcaaCGCg -3'
miRNA:   3'- gaCUGG---CAGGGCAGCAUGCGcg-GCGg -5'
32086 5' -59.5 NC_007016.1 + 99809 0.66 0.766138
Target:  5'- -gGGCUGUCaaacaCGUCGUcaaACGauggaGUCGCCg -3'
miRNA:   3'- gaCUGGCAGg----GCAGCA---UGCg----CGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 108678 0.66 0.766138
Target:  5'- -gGGCgGUCCCGgugugcacCGUGCGC-CUGCa -3'
miRNA:   3'- gaCUGgCAGGGCa-------GCAUGCGcGGCGg -5'
32086 5' -59.5 NC_007016.1 + 78610 0.67 0.728696
Target:  5'- aUGACCGcCCCGgccaccgaggCGUcCGCaaccaCCGCCg -3'
miRNA:   3'- gACUGGCaGGGCa---------GCAuGCGc----GGCGG- -5'
32086 5' -59.5 NC_007016.1 + 126947 0.67 0.728696
Target:  5'- -gGGCCGcCCCucCGcugGCGCGuuGCCu -3'
miRNA:   3'- gaCUGGCaGGGcaGCa--UGCGCggCGG- -5'
32086 5' -59.5 NC_007016.1 + 63001 0.67 0.709472
Target:  5'- aUGACCaaaacGUucaCCUGUaaaACGCGCCGCCu -3'
miRNA:   3'- gACUGG-----CA---GGGCAgcaUGCGCGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 38900 0.67 0.709472
Target:  5'- -gGACCGUCCCa----ACGCGCaGCCc -3'
miRNA:   3'- gaCUGGCAGGGcagcaUGCGCGgCGG- -5'
32086 5' -59.5 NC_007016.1 + 30885 0.67 0.699764
Target:  5'- -cGGCCGUgCCGggCGgugGUGCGCgGCCc -3'
miRNA:   3'- gaCUGGCAgGGCa-GCa--UGCGCGgCGG- -5'
32086 5' -59.5 NC_007016.1 + 68336 0.67 0.690002
Target:  5'- -gGACCG-CCCG-CGaUGCGCGuUCGCg -3'
miRNA:   3'- gaCUGGCaGGGCaGC-AUGCGC-GGCGg -5'
32086 5' -59.5 NC_007016.1 + 130021 0.68 0.660477
Target:  5'- -cGGCCGgCCCGggccCGcgGC-CGCCGCCc -3'
miRNA:   3'- gaCUGGCaGGGCa---GCa-UGcGCGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 120123 0.68 0.660477
Target:  5'- ---uCCGUUCCGcCGcgcaGCGCGCgGCCg -3'
miRNA:   3'- gacuGGCAGGGCaGCa---UGCGCGgCGG- -5'
32086 5' -59.5 NC_007016.1 + 116407 0.68 0.657511
Target:  5'- -gGGCCGcuggcgcggacauuUCCCagaacCGgcCGCGCCGCCa -3'
miRNA:   3'- gaCUGGC--------------AGGGca---GCauGCGCGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 130037 0.68 0.654542
Target:  5'- -cGGCCGggcgccugggggccCCCGcCGg--GCGCCGCCg -3'
miRNA:   3'- gaCUGGCa-------------GGGCaGCaugCGCGGCGG- -5'
32086 5' -59.5 NC_007016.1 + 59125 0.68 0.650582
Target:  5'- -cGAUCGUUucaCCGUCGgggGCGCGCCu-- -3'
miRNA:   3'- gaCUGGCAG---GGCAGCa--UGCGCGGcgg -5'
32086 5' -59.5 NC_007016.1 + 15418 0.68 0.640674
Target:  5'- gUGACCG-CCUGUCacgGUGCGCGguuUCGCg -3'
miRNA:   3'- gACUGGCaGGGCAG---CAUGCGC---GGCGg -5'
32086 5' -59.5 NC_007016.1 + 11897 0.68 0.630759
Target:  5'- ---uCCGUCUCGUaGUACuGCGCCGaCCc -3'
miRNA:   3'- gacuGGCAGGGCAgCAUG-CGCGGC-GG- -5'
32086 5' -59.5 NC_007016.1 + 122893 0.69 0.601048
Target:  5'- --aGCCGUgguguuccaccCCUGgcagugggCGUACGUGCCGCCc -3'
miRNA:   3'- gacUGGCA-----------GGGCa-------GCAUGCGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.