miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32087 3' -61.6 NC_007016.1 + 13894 0.67 0.561142
Target:  5'- uCGagaaGCCGCAcgCGGCCCUgccggcgguguucuUGAGGGCCu -3'
miRNA:   3'- -GCg---CGGUGUa-GUCGGGG--------------GCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 16734 0.68 0.505441
Target:  5'- gCGCGCCGCGUCcGCgucgccgccggaaUCCCGuggggcgaugAGGGCCa -3'
miRNA:   3'- -GCGCGGUGUAGuCG-------------GGGGC----------UUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 17386 0.66 0.623356
Target:  5'- -aCGCCAgAUCG--CCCCGAGcGGCCGc -3'
miRNA:   3'- gcGCGGUgUAGUcgGGGGCUU-CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 17656 0.71 0.337143
Target:  5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3'
miRNA:   3'- gcGCGGUGUa--GUCG-GGGGCU---UCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 17734 0.67 0.583721
Target:  5'- uGCGUCACGgagCGGUCUCCGugucuGCCGg -3'
miRNA:   3'- gCGCGGUGUa--GUCGGGGGCuuc--CGGC- -5'
32087 3' -61.6 NC_007016.1 + 20863 0.7 0.41655
Target:  5'- cCGCGgCGCGU--GCCCCgGAcGGCCGc -3'
miRNA:   3'- -GCGCgGUGUAguCGGGGgCUuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 21332 0.67 0.593597
Target:  5'- aCGgGCCcaaccGCGUUGGCCCC-GggGGUCu -3'
miRNA:   3'- -GCgCGG-----UGUAGUCGGGGgCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 21579 0.66 0.623357
Target:  5'- aGgGCCAC---GGCCCCaGAAGGCgGc -3'
miRNA:   3'- gCgCGGUGuagUCGGGGgCUUCCGgC- -5'
32087 3' -61.6 NC_007016.1 + 22768 0.72 0.301779
Target:  5'- aCGCGCCugGacggCGGCCaCCUGGcggcGGGCCa -3'
miRNA:   3'- -GCGCGGugUa---GUCGG-GGGCU----UCCGGc -5'
32087 3' -61.6 NC_007016.1 + 22946 0.67 0.554316
Target:  5'- gGUGCuCGCGUCucuGGCCCgCCGccagguGGCCGc -3'
miRNA:   3'- gCGCG-GUGUAG---UCGGG-GGCuu----CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 27680 0.67 0.573878
Target:  5'- aGCGCC-----GGCCUUCGggGGCUGa -3'
miRNA:   3'- gCGCGGuguagUCGGGGGCuuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 27841 1.09 0.000737
Target:  5'- aCGCGCCACAUCAGCCCCCGAAGGCCGg -3'
miRNA:   3'- -GCGCGGUGUAGUCGGGGGCUUCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 29823 0.68 0.486775
Target:  5'- aCGCGUuuguuguCACGaUAGCCCCCGGAGacCCGg -3'
miRNA:   3'- -GCGCG-------GUGUaGUCGGGGGCUUCc-GGC- -5'
32087 3' -61.6 NC_007016.1 + 41003 0.7 0.408107
Target:  5'- uGUGCCACuccucguacUCGGCCa-UGAGGGCCGg -3'
miRNA:   3'- gCGCGGUGu--------AGUCGGggGCUUCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 55874 0.68 0.524408
Target:  5'- aGCGCCaACGUUAacuacguGUgUCCGggGGCCa -3'
miRNA:   3'- gCGCGG-UGUAGU-------CGgGGGCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 59296 0.68 0.515837
Target:  5'- gGUGCCAauCGUCAggcgcGCCCCCGAcGGUg- -3'
miRNA:   3'- gCGCGGU--GUAGU-----CGGGGGCUuCCGgc -5'
32087 3' -61.6 NC_007016.1 + 70964 0.72 0.315572
Target:  5'- gCGCGCCGCcUCcugAGCgCCCCGuccgcacuGGCCGu -3'
miRNA:   3'- -GCGCGGUGuAG---UCG-GGGGCuu------CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 72495 0.66 0.653172
Target:  5'- uCGCGUCGacgGUCAGCCCCUuu--GCCGc -3'
miRNA:   3'- -GCGCGGUg--UAGUCGGGGGcuucCGGC- -5'
32087 3' -61.6 NC_007016.1 + 72705 0.67 0.593596
Target:  5'- gCGUgGCCACGUCGGUgaaCCUGAuuuuGGCCc -3'
miRNA:   3'- -GCG-CGGUGUAGUCGg--GGGCUu---CCGGc -5'
32087 3' -61.6 NC_007016.1 + 75372 0.66 0.603499
Target:  5'- aCGCGCaCGCAUC-GCCCCUu--GGCg- -3'
miRNA:   3'- -GCGCG-GUGUAGuCGGGGGcuuCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.