miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32087 3' -61.6 NC_007016.1 + 21579 0.66 0.623357
Target:  5'- aGgGCCAC---GGCCCCaGAAGGCgGc -3'
miRNA:   3'- gCgCGGUGuagUCGGGGgCUUCCGgC- -5'
32087 3' -61.6 NC_007016.1 + 55874 0.68 0.524408
Target:  5'- aGCGCCaACGUUAacuacguGUgUCCGggGGCCa -3'
miRNA:   3'- gCGCGG-UGUAGU-------CGgGGGCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 120655 0.68 0.525364
Target:  5'- aGCgGgCACGgugguUCAGCCCCCGuucGCCGg -3'
miRNA:   3'- gCG-CgGUGU-----AGUCGGGGGCuucCGGC- -5'
32087 3' -61.6 NC_007016.1 + 123407 0.68 0.534955
Target:  5'- uGCGgC-CAUCAGCgCCCUGggGaGCgGg -3'
miRNA:   3'- gCGCgGuGUAGUCG-GGGGCuuC-CGgC- -5'
32087 3' -61.6 NC_007016.1 + 108084 0.68 0.534955
Target:  5'- aCGCGCCAaggcCGUCGGagugCCCCGuAAGGgCa -3'
miRNA:   3'- -GCGCGGU----GUAGUCg---GGGGC-UUCCgGc -5'
32087 3' -61.6 NC_007016.1 + 27680 0.67 0.573878
Target:  5'- aGCGCC-----GGCCUUCGggGGCUGa -3'
miRNA:   3'- gCGCGGuguagUCGGGGGCuuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 17734 0.67 0.583721
Target:  5'- uGCGUCACGgagCGGUCUCCGugucuGCCGg -3'
miRNA:   3'- gCGCGGUGUa--GUCGGGGGCuuc--CGGC- -5'
32087 3' -61.6 NC_007016.1 + 125839 0.67 0.583721
Target:  5'- gGCGCUggaaaacgcaGCcgUAGCUCCUGcGGGCCa -3'
miRNA:   3'- gCGCGG----------UGuaGUCGGGGGCuUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 21332 0.67 0.593597
Target:  5'- aCGgGCCcaaccGCGUUGGCCCC-GggGGUCu -3'
miRNA:   3'- -GCgCGG-----UGUAGUCGGGGgCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 126492 0.68 0.515838
Target:  5'- aGgGCCGCggCGGCCCagCGAGGGUUc -3'
miRNA:   3'- gCgCGGUGuaGUCGGGg-GCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 84617 0.68 0.494203
Target:  5'- --aGCCACugucggcuuuggauAUCAGCcauuCCCUGAGGGCCa -3'
miRNA:   3'- gcgCGGUG--------------UAGUCG----GGGGCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 130189 0.69 0.469349
Target:  5'- gGCGCCGCGccccgaCGcCCCCCGAgcccgGGGCCc -3'
miRNA:   3'- gCGCGGUGUa-----GUcGGGGGCU-----UCCGGc -5'
32087 3' -61.6 NC_007016.1 + 70964 0.72 0.315572
Target:  5'- gCGCGCCGCcUCcugAGCgCCCCGuccgcacuGGCCGu -3'
miRNA:   3'- -GCGCGGUGuAG---UCG-GGGGCuu------CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 130231 0.72 0.322644
Target:  5'- cCGCGgCGCG-CGGCUCCCGAugccgggcGGCCGc -3'
miRNA:   3'- -GCGCgGUGUaGUCGGGGGCUu-------CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 17656 0.71 0.337143
Target:  5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3'
miRNA:   3'- gcGCGGUGUa--GUCG-GGGGCU---UCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 88243 0.71 0.367541
Target:  5'- cCGCGCCGCAccacUAGCCUCCGccggagcuuGAGGCgGu -3'
miRNA:   3'- -GCGCGGUGUa---GUCGGGGGC---------UUCCGgC- -5'
32087 3' -61.6 NC_007016.1 + 129874 0.69 0.425099
Target:  5'- gGCGCCcgGCGggGGCCCCCaGGcgcccGGCCGg -3'
miRNA:   3'- gCGCGG--UGUagUCGGGGG-CUu----CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 130357 0.69 0.425099
Target:  5'- gGCGCCucgGCGgggcCGGCCCcggggcgcgaCCGAGGGCCc -3'
miRNA:   3'- gCGCGG---UGUa---GUCGGG----------GGCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 130059 0.69 0.432882
Target:  5'- cCGCGCCGCGcgccgggccgcuuUCGGUUCgCGG-GGCCGg -3'
miRNA:   3'- -GCGCGGUGU-------------AGUCGGGgGCUuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 129957 0.69 0.451358
Target:  5'- cCGCGCgGCccccgGGCCCCCGAgcggGGcGCCGc -3'
miRNA:   3'- -GCGCGgUGuag--UCGGGGGCU----UC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.