miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32269 5' -41.8 NC_007022.1 + 104565 0.66 1
Target:  5'- gGGCCg-----AUGUUGguGAUAGCaCCa -3'
miRNA:   3'- -CCGGagaaaaUAUAACguUUGUUG-GG- -5'
32269 5' -41.8 NC_007022.1 + 114735 0.67 1
Target:  5'- aGCCUCUag-GUGgugaGCGcAugGACCCg -3'
miRNA:   3'- cCGGAGAaaaUAUaa--CGU-UugUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 165594 0.67 1
Target:  5'- cGGCCUUUgaUGUAUcgGCcAGCAGCa- -3'
miRNA:   3'- -CCGGAGAaaAUAUAa-CGuUUGUUGgg -5'
32269 5' -41.8 NC_007022.1 + 138924 0.66 1
Target:  5'- uGGUCg--UUUAUGUUGaCGuGCAACgCCg -3'
miRNA:   3'- -CCGGagaAAAUAUAAC-GUuUGUUG-GG- -5'
32269 5' -41.8 NC_007022.1 + 97619 0.69 1
Target:  5'- uGUCUCUcgUUAUuuUUGCGuggcucACAACCCa -3'
miRNA:   3'- cCGGAGAa-AAUAu-AACGUu-----UGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 22642 0.69 1
Target:  5'- aGCUUCUUcucuuUGUUGgAGGCAAUCCc -3'
miRNA:   3'- cCGGAGAAaau--AUAACgUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 33028 0.69 1
Target:  5'- uGGCCgaCUUUcaUGUAUUGCAuAUGGCUa -3'
miRNA:   3'- -CCGGa-GAAA--AUAUAACGUuUGUUGGg -5'
32269 5' -41.8 NC_007022.1 + 160593 0.68 1
Target:  5'- aGGCgCUCUUccGUAUgcgagaGCAuGCAGCCa -3'
miRNA:   3'- -CCG-GAGAAaaUAUAa-----CGUuUGUUGGg -5'
32269 5' -41.8 NC_007022.1 + 117565 0.68 1
Target:  5'- aGGUCUauugcagaUUUAUGacGCAAACAACCUu -3'
miRNA:   3'- -CCGGAga------AAAUAUaaCGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 151083 0.67 1
Target:  5'- uGCUUCUgguucUGUAUUGUuuGACGGCUCu -3'
miRNA:   3'- cCGGAGAaa---AUAUAACGu-UUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 112787 0.66 1
Target:  5'- cGGCCaauuUCUUUUugcuuucggaUGCAGAUaauGACCCg -3'
miRNA:   3'- -CCGG----AGAAAAuaua------ACGUUUG---UUGGG- -5'
32269 5' -41.8 NC_007022.1 + 31788 0.66 1
Target:  5'- cGGCCag---UAUAaccGCGAACAGCCg -3'
miRNA:   3'- -CCGGagaaaAUAUaa-CGUUUGUUGGg -5'
32269 5' -41.8 NC_007022.1 + 56046 0.66 1
Target:  5'- aGCCUCggUUAUGaUGcCAAAUcuGACUCa -3'
miRNA:   3'- cCGGAGaaAAUAUaAC-GUUUG--UUGGG- -5'
32269 5' -41.8 NC_007022.1 + 103980 0.67 1
Target:  5'- gGGCCUuuucCUUUUGUAggG-AAGCGACUUg -3'
miRNA:   3'- -CCGGA----GAAAAUAUaaCgUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 116397 0.67 1
Target:  5'- gGGCagg--UUAUAUcgugggauaaUGCGAGCGACCUg -3'
miRNA:   3'- -CCGgagaaAAUAUA----------ACGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 138415 0.68 1
Target:  5'- cGCCgUCUUcUGguUGUUGCuuGgAACCCg -3'
miRNA:   3'- cCGG-AGAAaAU--AUAACGuuUgUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 149676 0.68 1
Target:  5'- cGGCCaUCU---GUA-UGCcuGGCAGCCCc -3'
miRNA:   3'- -CCGG-AGAaaaUAUaACGu-UUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 160183 0.68 1
Target:  5'- gGGCCUCUUUUuguuuuUGUUGauaAAACAGuuUa -3'
miRNA:   3'- -CCGGAGAAAAu-----AUAACg--UUUGUUggG- -5'
32269 5' -41.8 NC_007022.1 + 151199 0.68 1
Target:  5'- uGGCCUCggcg-----GCGAGCGcACCUa -3'
miRNA:   3'- -CCGGAGaaaauauaaCGUUUGU-UGGG- -5'
32269 5' -41.8 NC_007022.1 + 78794 0.69 1
Target:  5'- gGGCaUCggugGUGUUGCAAACuuCCa -3'
miRNA:   3'- -CCGgAGaaaaUAUAACGUUUGuuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.