miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32275 3' -43.9 NC_007023.1 + 17619 0.68 0.999997
Target:  5'- -gGAUCUAUCCGUCgaagaaagGCGAUC-ACAUg -3'
miRNA:   3'- gaUUAGGUAGGUAG--------UGUUAGuUGUGu -5'
32275 3' -43.9 NC_007023.1 + 49261 0.67 0.999999
Target:  5'- ----cCCAUUCAUUACAAUaaCAGCGCc -3'
miRNA:   3'- gauuaGGUAGGUAGUGUUA--GUUGUGu -5'
32275 3' -43.9 NC_007023.1 + 146061 0.67 0.999999
Target:  5'- gUAAUcCCAUUUuggAUCACAGUCugGACGCAu -3'
miRNA:   3'- gAUUA-GGUAGG---UAGUGUUAG--UUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 54297 0.67 0.999999
Target:  5'- cCUGAUCCGauaUCCAuuauaagaaccauuUCGCAAaugCAGCGCc -3'
miRNA:   3'- -GAUUAGGU---AGGU--------------AGUGUUa--GUUGUGu -5'
32275 3' -43.9 NC_007023.1 + 174834 0.66 1
Target:  5'- -gAAUCCAUCauuacCGCGAUCAGC-CGu -3'
miRNA:   3'- gaUUAGGUAGgua--GUGUUAGUUGuGU- -5'
32275 3' -43.9 NC_007023.1 + 141012 0.66 1
Target:  5'- -aGAUCgAUCC-UUACugguAUCAACGCGa -3'
miRNA:   3'- gaUUAGgUAGGuAGUGu---UAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 65687 0.66 1
Target:  5'- uUAAUCaGUUCAcCGCAAUCAGgACAc -3'
miRNA:   3'- gAUUAGgUAGGUaGUGUUAGUUgUGU- -5'
32275 3' -43.9 NC_007023.1 + 151081 0.71 0.999625
Target:  5'- -cAAUCCcaccaCCcgCACAGUCAACACc -3'
miRNA:   3'- gaUUAGGua---GGuaGUGUUAGUUGUGu -5'
32275 3' -43.9 NC_007023.1 + 48965 0.71 0.999822
Target:  5'- ----gUCAUCCAUCACGGUUAAUAa- -3'
miRNA:   3'- gauuaGGUAGGUAGUGUUAGUUGUgu -5'
32275 3' -43.9 NC_007023.1 + 162879 0.69 0.999977
Target:  5'- aUAGUagCAUcaCCAUCGgAAUCAACACAu -3'
miRNA:   3'- gAUUAg-GUA--GGUAGUgUUAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 123488 0.68 0.999992
Target:  5'- uUAGUgCAUCCGUCACu-UCGACu-- -3'
miRNA:   3'- gAUUAgGUAGGUAGUGuuAGUUGugu -5'
32275 3' -43.9 NC_007023.1 + 44880 1.12 0.035883
Target:  5'- aCUAAUCCAUCCAUCACAAUCAACACAa -3'
miRNA:   3'- -GAUUAGGUAGGUAGUGUUAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 58757 0.69 0.999988
Target:  5'- ---uUCCAaCCAUUACGAUCGccCACAa -3'
miRNA:   3'- gauuAGGUaGGUAGUGUUAGUu-GUGU- -5'
32275 3' -43.9 NC_007023.1 + 97669 0.7 0.999864
Target:  5'- uCUAAUCCAUCCuAUCAgCGcccuuauguGUgGACGCAg -3'
miRNA:   3'- -GAUUAGGUAGG-UAGU-GU---------UAgUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 166048 0.67 0.999999
Target:  5'- --cGUUCAcgCCGUCGC--UCAACACAg -3'
miRNA:   3'- gauUAGGUa-GGUAGUGuuAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 124802 0.69 0.999977
Target:  5'- -aAGUCCcgcuGUCCuUCAUAGUUAGCAUAu -3'
miRNA:   3'- gaUUAGG----UAGGuAGUGUUAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 79928 0.68 0.999992
Target:  5'- -gAGUCCAUCCAaaCGCuuUCAGC-CAg -3'
miRNA:   3'- gaUUAGGUAGGUa-GUGuuAGUUGuGU- -5'
32275 3' -43.9 NC_007023.1 + 20930 0.66 1
Target:  5'- --cGUCCAUCgacaCAUCAagaaGGUUAGCACGa -3'
miRNA:   3'- gauUAGGUAG----GUAGUg---UUAGUUGUGU- -5'
32275 3' -43.9 NC_007023.1 + 41037 0.66 1
Target:  5'- ---cUCCAUCCAUUugaaagauuAUAAUCAuCACGg -3'
miRNA:   3'- gauuAGGUAGGUAG---------UGUUAGUuGUGU- -5'
32275 3' -43.9 NC_007023.1 + 73945 0.66 1
Target:  5'- ---uUCCAUCCAguuCAAUCAGgAUAa -3'
miRNA:   3'- gauuAGGUAGGUaguGUUAGUUgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.