Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 49261 | 0.67 | 0.999999 |
Target: 5'- ----cCCAUUCAUUACAAUaaCAGCGCc -3' miRNA: 3'- gauuaGGUAGGUAGUGUUA--GUUGUGu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 166048 | 0.67 | 0.999999 |
Target: 5'- --cGUUCAcgCCGUCGC--UCAACACAg -3' miRNA: 3'- gauUAGGUa-GGUAGUGuuAGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 92951 | 0.67 | 0.999999 |
Target: 5'- --uGUCCcUCCAUCGCu-UCAACGa- -3' miRNA: 3'- gauUAGGuAGGUAGUGuuAGUUGUgu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 146061 | 0.67 | 0.999999 |
Target: 5'- gUAAUcCCAUUUuggAUCACAGUCugGACGCAu -3' miRNA: 3'- gAUUA-GGUAGG---UAGUGUUAG--UUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 174834 | 0.66 | 1 |
Target: 5'- -gAAUCCAUCauuacCGCGAUCAGC-CGu -3' miRNA: 3'- gaUUAGGUAGgua--GUGUUAGUUGuGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 65687 | 0.66 | 1 |
Target: 5'- uUAAUCaGUUCAcCGCAAUCAGgACAc -3' miRNA: 3'- gAUUAGgUAGGUaGUGUUAGUUgUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 20930 | 0.66 | 1 |
Target: 5'- --cGUCCAUCgacaCAUCAagaaGGUUAGCACGa -3' miRNA: 3'- gauUAGGUAG----GUAGUg---UUAGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 41037 | 0.66 | 1 |
Target: 5'- ---cUCCAUCCAUUugaaagauuAUAAUCAuCACGg -3' miRNA: 3'- gauuAGGUAGGUAG---------UGUUAGUuGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 73945 | 0.66 | 1 |
Target: 5'- ---uUCCAUCCAguuCAAUCAGgAUAa -3' miRNA: 3'- gauuAGGUAGGUaguGUUAGUUgUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 141012 | 0.66 | 1 |
Target: 5'- -aGAUCgAUCC-UUACugguAUCAACGCGa -3' miRNA: 3'- gaUUAGgUAGGuAGUGu---UAGUUGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home