Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32296 | 3' | -60 | NC_007024.1 | + | 25471 | 0.67 | 0.452815 |
Target: 5'- aCGCCaagGGGCGUGAcgGCCgaCCGUcaacaacaCGCCa -3' miRNA: 3'- -GCGGga-UUCGCGCUa-CGG--GGCA--------GCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 37907 | 0.67 | 0.452815 |
Target: 5'- uGCaCCUcucGGGCGCGAUcGCgcucaaCCUGUgGCCg -3' miRNA: 3'- gCG-GGA---UUCGCGCUA-CG------GGGCAgCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 45625 | 0.67 | 0.434024 |
Target: 5'- aGUCCgGAG-GCGGUGCUUCGgaagUCGCCc -3' miRNA: 3'- gCGGGaUUCgCGCUACGGGGC----AGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 33643 | 0.67 | 0.415693 |
Target: 5'- gGCCCgAAGCaGcCGAUgaagGCCCCuggCGCCg -3' miRNA: 3'- gCGGGaUUCG-C-GCUA----CGGGGca-GCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 7794 | 0.67 | 0.414788 |
Target: 5'- uGgUCUGGGUGCGGUGauugaccaggccuUCCaCGUCGCCc -3' miRNA: 3'- gCgGGAUUCGCGCUAC-------------GGG-GCAGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 8804 | 0.68 | 0.397843 |
Target: 5'- uGCCCUGGaa-CGAguUGCCcgugCCGUCGCCg -3' miRNA: 3'- gCGGGAUUcgcGCU--ACGG----GGCAGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 21417 | 0.68 | 0.396964 |
Target: 5'- aCGCUgU-AGCGUGAugaagcagcucguUGCaucuugCCCGUCGCCa -3' miRNA: 3'- -GCGGgAuUCGCGCU-------------ACG------GGGCAGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 9174 | 0.69 | 0.338598 |
Target: 5'- gGCCgUcAGGCcgGCGAUGCCguacuuguuggaaCCGUCGUCg -3' miRNA: 3'- gCGGgA-UUCG--CGCUACGG-------------GGCAGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 8137 | 0.69 | 0.308888 |
Target: 5'- gGCCU--GGCGau-UGCCaCCGUUGCCg -3' miRNA: 3'- gCGGGauUCGCgcuACGG-GGCAGCGG- -5' |
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32296 | 3' | -60 | NC_007024.1 | + | 1580 | 1.11 | 0.000291 |
Target: 5'- uCGCCCUAAGCGCGAUGCCCCGUCGCCu -3' miRNA: 3'- -GCGGGAUUCGCGCUACGGGGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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