Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32314 | 3' | -52.6 | NC_007024.1 | + | 47106 | 0.66 | 0.850699 |
Target: 5'- gCAA-CUGAAgaUGCCAgCgACGCCAa -3' miRNA: 3'- gGUUgGACUUgaACGGUgGaUGCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 13393 | 0.66 | 0.823659 |
Target: 5'- cCCAGCCaccGCcaccGCCACCgcCGCCAg -3' miRNA: 3'- -GGUUGGacuUGaa--CGGUGGauGCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 3142 | 0.66 | 0.823659 |
Target: 5'- -aGGCCUGGACgauaacUGCCuuGCCgggcagucgGCGCCGu -3' miRNA: 3'- ggUUGGACUUGa-----ACGG--UGGa--------UGCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 36241 | 0.67 | 0.804568 |
Target: 5'- gCAGCCUGAACgccugGCUGCuCUGCGagCGa -3' miRNA: 3'- gGUUGGACUUGaa---CGGUG-GAUGCg-GU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 27999 | 0.67 | 0.774549 |
Target: 5'- cUCGGCCUGGACcgGCCAaugCUG-GCCAa -3' miRNA: 3'- -GGUUGGACUUGaaCGGUg--GAUgCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 19986 | 0.68 | 0.732437 |
Target: 5'- aCAACCUGAACUU-CCGa-UACaGCCAa -3' miRNA: 3'- gGUUGGACUUGAAcGGUggAUG-CGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 54998 | 0.68 | 0.732437 |
Target: 5'- aCCGACCgGAugacGCUUcaGCCACUcgAUGCCGu -3' miRNA: 3'- -GGUUGGaCU----UGAA--CGGUGGa-UGCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 9631 | 0.69 | 0.688648 |
Target: 5'- aCCGGCC--AGCUccGCCGCCUugGUCu -3' miRNA: 3'- -GGUUGGacUUGAa-CGGUGGAugCGGu -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 7627 | 0.73 | 0.479645 |
Target: 5'- uCCAGCUUGGACUUGUccacggCACCgucgACGuCCAg -3' miRNA: 3'- -GGUUGGACUUGAACG------GUGGa---UGC-GGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 8879 | 0.74 | 0.400512 |
Target: 5'- uCCAGCaguucgaagUGAGCgUGCCGCCguugGCGCCGg -3' miRNA: 3'- -GGUUGg--------ACUUGaACGGUGGa---UGCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 8140 | 0.79 | 0.206529 |
Target: 5'- gCCGGCCUGGcgaUUGCCACCguugcCGCCAg -3' miRNA: 3'- -GGUUGGACUug-AACGGUGGau---GCGGU- -5' |
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32314 | 3' | -52.6 | NC_007024.1 | + | 22825 | 1.11 | 0.001455 |
Target: 5'- uCCAACCUGAACUUGCCACCUACGCCAu -3' miRNA: 3'- -GGUUGGACUUGAACGGUGGAUGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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