miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32319 5' -46.8 NC_007024.1 + 34307 0.67 0.981636
Target:  5'- uCUUGACCaauucggGCACCAGcUCCGAu -3'
miRNA:   3'- -GGACUGGauacuaaUGUGGUU-AGGCU- -5'
32319 5' -46.8 NC_007024.1 + 52464 0.7 0.94782
Target:  5'- gCCUGACCaUGUGGcgUAUACUuaccuGUCUGAc -3'
miRNA:   3'- -GGACUGG-AUACUa-AUGUGGu----UAGGCU- -5'
32319 5' -46.8 NC_007024.1 + 11999 0.72 0.859108
Target:  5'- aCCUGGagaggugGUGGUUGCACCAacgAUCUGAg -3'
miRNA:   3'- -GGACUgga----UACUAAUGUGGU---UAGGCU- -5'
32319 5' -46.8 NC_007024.1 + 18779 0.73 0.831839
Target:  5'- -gUGGCCcg-GAUcuugACGCCGAUCCGAg -3'
miRNA:   3'- ggACUGGauaCUAa---UGUGGUUAGGCU- -5'
32319 5' -46.8 NC_007024.1 + 30985 1.14 0.004442
Target:  5'- aCCUGACCUAUGAUUACACCAAUCCGAa -3'
miRNA:   3'- -GGACUGGAUACUAAUGUGGUUAGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.