miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32348 5' -53.7 NC_007024.1 + 9188 0.66 0.771185
Target:  5'- cCGGCCGAACCgcGGGCcg-UCagGCCGGc -3'
miRNA:   3'- uGUCGGUUUGG--UCCGauaAG--CGGCUa -5'
32348 5' -53.7 NC_007024.1 + 3129 0.67 0.717494
Target:  5'- aACuGCCuuGCCGGGCaGUcggCGCCGu- -3'
miRNA:   3'- -UGuCGGuuUGGUCCGaUAa--GCGGCua -5'
32348 5' -53.7 NC_007024.1 + 33636 0.67 0.684101
Target:  5'- aGCAGCCGAugaAGGCcccuggCGCCGAc -3'
miRNA:   3'- -UGUCGGUUuggUCCGauaa--GCGGCUa -5'
32348 5' -53.7 NC_007024.1 + 34153 0.68 0.638892
Target:  5'- gGCAGUCGAGCCGGGUgcgg-GCCuGAUg -3'
miRNA:   3'- -UGUCGGUUUGGUCCGauaagCGG-CUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.