miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32381 5' -53.4 NC_007041.1 + 4270 0.66 0.324204
Target:  5'- --cGGGCCcAGGCUUG-GCuCAGGCUUGg -3'
miRNA:   3'- caaCUUGG-UUCGGACuCG-GUUCGGAC- -5'
32381 5' -53.4 NC_007041.1 + 4313 0.75 0.079899
Target:  5'- -cUGGACCAAGCUUGuaAGCCA-GCCUu -3'
miRNA:   3'- caACUUGGUUCGGAC--UCGGUuCGGAc -5'
32381 5' -53.4 NC_007041.1 + 4314 0.96 0.001645
Target:  5'- aGUUGAACCAAGCCUGA-CCAAGCCUGg -3'
miRNA:   3'- -CAACUUGGUUCGGACUcGGUUCGGAC- -5'
32381 5' -53.4 NC_007041.1 + 4371 0.73 0.114494
Target:  5'- -cUGGguGCCAAGCCUGGuuGCCAGcCCUGa -3'
miRNA:   3'- caACU--UGGUUCGGACU--CGGUUcGGAC- -5'
32381 5' -53.4 NC_007041.1 + 4465 0.79 0.040835
Target:  5'- -aUGGGCCAAGUCUGgcaaccaagcaugGGCCAGGUCUGg -3'
miRNA:   3'- caACUUGGUUCGGAC-------------UCGGUUCGGAC- -5'
32381 5' -53.4 NC_007041.1 + 4937 0.7 0.184347
Target:  5'- --aGAuaACCuAGCCUuGGCCAAGCCg- -3'
miRNA:   3'- caaCU--UGGuUCGGAcUCGGUUCGGac -5'
32381 5' -53.4 NC_007041.1 + 5015 0.74 0.085343
Target:  5'- -aUGAuuacCCAGGCUUGGGCCAAGaCUGa -3'
miRNA:   3'- caACUu---GGUUCGGACUCGGUUCgGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.