Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 51478 | 0.66 | 0.666949 |
Target: 5'- --cGUCACUGUCGUUAUCGUCAUCu- -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 38544 | 0.7 | 0.466885 |
Target: 5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3' miRNA: 3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 39770 | 0.69 | 0.519118 |
Target: 5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3' miRNA: 3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 142068 | 0.69 | 0.537371 |
Target: 5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3' miRNA: 3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 16395 | 0.68 | 0.548039 |
Target: 5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3' miRNA: 3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 41177 | 0.68 | 0.587332 |
Target: 5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3' miRNA: 3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 127169 | 0.68 | 0.597248 |
Target: 5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3' miRNA: 3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 3036 | 0.67 | 0.647054 |
Target: 5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 19677 | 0.67 | 0.657011 |
Target: 5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3' miRNA: 3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 125770 | 0.7 | 0.436527 |
Target: 5'- uGUUGUCGCUGCCGuUUGCCGCCcauuaaauggauGCUGUc -3' miRNA: 3'- -UAACAGUGGCGGC-GGUGGCGG------------UGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 54900 | 0.71 | 0.419209 |
Target: 5'- --cGaCACCGCCGCCGCCGCaaacuuuuaUAUCGa -3' miRNA: 3'- uaaCaGUGGCGGCGGUGGCG---------GUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 76888 | 0.71 | 0.402315 |
Target: 5'- ---uUCGCCGCUGCUGUCGUCAUCGCu -3' miRNA: 3'- uaacAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 36135 | 0.76 | 0.199184 |
Target: 5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3' miRNA: 3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 91803 | 0.75 | 0.224592 |
Target: 5'- uAUUGUcCGCCGCugagCGCCGCCuGCCuCCGCu -3' miRNA: 3'- -UAACA-GUGGCG----GCGGUGG-CGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 75636 | 0.74 | 0.270915 |
Target: 5'- --aGUCACUGCCGUUGCCGCCAaacaaaUCGUc -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGU------GGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 126870 | 0.73 | 0.310488 |
Target: 5'- -cUGUUGCUGUugcgaUGCCGCCGCCuCCGCc -3' miRNA: 3'- uaACAGUGGCG-----GCGGUGGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 44261 | 0.73 | 0.324622 |
Target: 5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3' miRNA: 3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 37187 | 0.72 | 0.34671 |
Target: 5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3' miRNA: 3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 123838 | 0.72 | 0.34671 |
Target: 5'- -aUGUCAUCGCUGCuCACCGCCGa--- -3' miRNA: 3'- uaACAGUGGCGGCG-GUGGCGGUggcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 64517 | 0.72 | 0.377799 |
Target: 5'- --aGUaCGCUGCCGUCGCCGgCGCCa- -3' miRNA: 3'- uaaCA-GUGGCGGCGGUGGCgGUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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