Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 1413 | 0.86 | 0.042735 |
Target: 5'- ----cCACCGCCaccGCCACCGCCACCGCc -3' miRNA: 3'- uaacaGUGGCGG---CGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 1455 | 0.84 | 0.055665 |
Target: 5'- ----cCACCGCCaCCGCCGCCACCGCc -3' miRNA: 3'- uaacaGUGGCGGcGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 1494 | 0.66 | 0.686738 |
Target: 5'- ----aUACCaCCGCCACCuucuuuGCCGCCGa -3' miRNA: 3'- uaacaGUGGcGGCGGUGG------CGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 3036 | 0.67 | 0.647054 |
Target: 5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 3854 | 0.69 | 0.513404 |
Target: 5'- -aUGUCAgCuCCGCCACCGaugaugaugccagcaCCACCGa -3' miRNA: 3'- uaACAGUgGcGGCGGUGGC---------------GGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 4876 | 0.69 | 0.490819 |
Target: 5'- ----cCACCGCCGCCaccacguuggauGCgauggacgccauCGCCGCCGCc -3' miRNA: 3'- uaacaGUGGCGGCGG------------UG------------GCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 14723 | 0.72 | 0.362022 |
Target: 5'- cUUGaggCGCCGCUGCUggagaacuACCGCCucCCGCg -3' miRNA: 3'- uAACa--GUGGCGGCGG--------UGGCGGu-GGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 16395 | 0.68 | 0.548039 |
Target: 5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3' miRNA: 3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 17153 | 0.66 | 0.725731 |
Target: 5'- -cUGUCGUCGUCGUCGUCGUCAUCGUc -3' miRNA: 3'- uaACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 17367 | 0.69 | 0.50961 |
Target: 5'- -cUGUCGcuuCCGuuGCUAUCGUCACUGUc -3' miRNA: 3'- uaACAGU---GGCggCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 19465 | 0.67 | 0.617146 |
Target: 5'- ---cUCugCGCCuuGUCGCguaGCCGCCGCu -3' miRNA: 3'- uaacAGugGCGG--CGGUGg--CGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 19677 | 0.67 | 0.657011 |
Target: 5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3' miRNA: 3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 24124 | 0.74 | 0.258657 |
Target: 5'- ---aUCACCGCCGgaGCCGCCAUCGa -3' miRNA: 3'- uaacAGUGGCGGCggUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 26690 | 1.08 | 0.001219 |
Target: 5'- cAUUGUCACCGCCGCCACCGCCACCGCc -3' miRNA: 3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 36135 | 0.76 | 0.199184 |
Target: 5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3' miRNA: 3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 37187 | 0.72 | 0.34671 |
Target: 5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3' miRNA: 3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 38544 | 0.7 | 0.466885 |
Target: 5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3' miRNA: 3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 39770 | 0.69 | 0.519118 |
Target: 5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3' miRNA: 3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 41177 | 0.68 | 0.587332 |
Target: 5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3' miRNA: 3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 44261 | 0.73 | 0.324622 |
Target: 5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3' miRNA: 3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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