miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 17367 0.69 0.50961
Target:  5'- -cUGUCGcuuCCGuuGCUAUCGUCACUGUc -3'
miRNA:   3'- uaACAGU---GGCggCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 97878 0.69 0.528696
Target:  5'- -gUGUCGCUGCCGCCGagaguucuaGCCAUaCGUc -3'
miRNA:   3'- uaACAGUGGCGGCGGUgg-------CGGUG-GCG- -5'
32567 5' -60.6 NC_007151.1 + 62262 0.69 0.490819
Target:  5'- -cUGUCGuuaaUGCCGUCGCCGCCGCa-- -3'
miRNA:   3'- uaACAGUg---GCGGCGGUGGCGGUGgcg -5'
32567 5' -60.6 NC_007151.1 + 3854 0.69 0.513404
Target:  5'- -aUGUCAgCuCCGCCACCGaugaugaugccagcaCCACCGa -3'
miRNA:   3'- uaACAGUgGcGGCGGUGGC---------------GGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 142068 0.69 0.537371
Target:  5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3'
miRNA:   3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5'
32567 5' -60.6 NC_007151.1 + 39770 0.69 0.519118
Target:  5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3'
miRNA:   3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 38544 0.7 0.466885
Target:  5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3'
miRNA:   3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 125770 0.7 0.436527
Target:  5'- uGUUGUCGCUGCCGuUUGCCGCCcauuaaauggauGCUGUc -3'
miRNA:   3'- -UAACAGUGGCGGC-GGUGGCGG------------UGGCG- -5'
32567 5' -60.6 NC_007151.1 + 120396 0.71 0.385858
Target:  5'- ---uUCGCUGCCGCCGaCGUCAUCGUg -3'
miRNA:   3'- uaacAGUGGCGGCGGUgGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 76888 0.71 0.402315
Target:  5'- ---uUCGCCGCUGCUGUCGUCAUCGCu -3'
miRNA:   3'- uaacAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 54900 0.71 0.419209
Target:  5'- --cGaCACCGCCGCCGCCGCaaacuuuuaUAUCGa -3'
miRNA:   3'- uaaCaGUGGCGGCGGUGGCG---------GUGGCg -5'
32567 5' -60.6 NC_007151.1 + 37187 0.72 0.34671
Target:  5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3'
miRNA:   3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 123838 0.72 0.34671
Target:  5'- -aUGUCAUCGCUGCuCACCGCCGa--- -3'
miRNA:   3'- uaACAGUGGCGGCG-GUGGCGGUggcg -5'
32567 5' -60.6 NC_007151.1 + 64517 0.72 0.377799
Target:  5'- --aGUaCGCUGCCGUCGCCGgCGCCa- -3'
miRNA:   3'- uaaCA-GUGGCGGCGGUGGCgGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 14723 0.72 0.362022
Target:  5'- cUUGaggCGCCGCUGCUggagaacuACCGCCucCCGCg -3'
miRNA:   3'- uAACa--GUGGCGGCGG--------UGGCGGu-GGCG- -5'
32567 5' -60.6 NC_007151.1 + 126870 0.73 0.310488
Target:  5'- -cUGUUGCUGUugcgaUGCCGCCGCCuCCGCc -3'
miRNA:   3'- uaACAGUGGCG-----GCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 44261 0.73 0.324622
Target:  5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3'
miRNA:   3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 75636 0.74 0.270915
Target:  5'- --aGUCACUGCCGUUGCCGCCAaacaaaUCGUc -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGU------GGCG- -5'
32567 5' -60.6 NC_007151.1 + 24124 0.74 0.258657
Target:  5'- ---aUCACCGCCGgaGCCGCCAUCGa -3'
miRNA:   3'- uaacAGUGGCGGCggUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 91803 0.75 0.224592
Target:  5'- uAUUGUcCGCCGCugagCGCCGCCuGCCuCCGCu -3'
miRNA:   3'- -UAACA-GUGGCG----GCGGUGG-CGGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.