miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 38544 0.7 0.466885
Target:  5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3'
miRNA:   3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 62262 0.69 0.490819
Target:  5'- -cUGUCGuuaaUGCCGUCGCCGCCGCa-- -3'
miRNA:   3'- uaACAGUg---GCGGCGGUGGCGGUGgcg -5'
32567 5' -60.6 NC_007151.1 + 4876 0.69 0.490819
Target:  5'- ----cCACCGCCGCCaccacguuggauGCgauggacgccauCGCCGCCGCc -3'
miRNA:   3'- uaacaGUGGCGGCGG------------UG------------GCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 17367 0.69 0.50961
Target:  5'- -cUGUCGcuuCCGuuGCUAUCGUCACUGUc -3'
miRNA:   3'- uaACAGU---GGCggCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 3854 0.69 0.513404
Target:  5'- -aUGUCAgCuCCGCCACCGaugaugaugccagcaCCACCGa -3'
miRNA:   3'- uaACAGUgGcGGCGGUGGC---------------GGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 39770 0.69 0.519118
Target:  5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3'
miRNA:   3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 97878 0.69 0.528696
Target:  5'- -gUGUCGCUGCCGCCGagaguucuaGCCAUaCGUc -3'
miRNA:   3'- uaACAGUGGCGGCGGUgg-------CGGUG-GCG- -5'
32567 5' -60.6 NC_007151.1 + 142068 0.69 0.537371
Target:  5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3'
miRNA:   3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5'
32567 5' -60.6 NC_007151.1 + 16395 0.68 0.548039
Target:  5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3'
miRNA:   3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 60219 0.68 0.557796
Target:  5'- --cGUCACCGCUuucguugaGCCACacaugGCCAUCGa -3'
miRNA:   3'- uaaCAGUGGCGG--------CGGUGg----CGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 62764 0.68 0.5676
Target:  5'- uUUGUCAUCGCCGgCGCUG--AUCGCg -3'
miRNA:   3'- uAACAGUGGCGGCgGUGGCggUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 41177 0.68 0.587332
Target:  5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3'
miRNA:   3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 127169 0.68 0.597248
Target:  5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3'
miRNA:   3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 90050 0.67 0.617146
Target:  5'- cGUUGUUGUCGUCGUCGUCGUCGCCGUc -3'
miRNA:   3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 49122 0.67 0.617146
Target:  5'- aAUUG--GCCGUCGUCAUCGaCCAUCGUg -3'
miRNA:   3'- -UAACagUGGCGGCGGUGGC-GGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 19465 0.67 0.617146
Target:  5'- ---cUCugCGCCuuGUCGCguaGCCGCCGCu -3'
miRNA:   3'- uaacAGugGCGG--CGGUGg--CGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 3036 0.67 0.647054
Target:  5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5'
32567 5' -60.6 NC_007151.1 + 19677 0.67 0.657011
Target:  5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3'
miRNA:   3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 145829 0.66 0.666949
Target:  5'- ---uUUAUCGUgGCCugUGCCAUUGCa -3'
miRNA:   3'- uaacAGUGGCGgCGGugGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 51478 0.66 0.666949
Target:  5'- --cGUCACUGUCGUUAUCGUCAUCu- -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.