miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 69927 0.72 0.963411
Target:  5'- cGACGACGGaGAUGACGuguuUAAAAUCGu -3'
miRNA:   3'- -CUGCUGCUgCUGCUGCu---GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 47875 0.72 0.963411
Target:  5'- cGCGG-GACGAuCGugGAUGGAGUCGAc -3'
miRNA:   3'- cUGCUgCUGCU-GCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 54766 0.73 0.955969
Target:  5'- --gGACGACGACGACGuauCAAuccGAUCa- -3'
miRNA:   3'- cugCUGCUGCUGCUGCu--GUU---UUAGcu -5'
32575 5' -48.4 NC_007151.1 + 100523 0.67 0.998881
Target:  5'- -uUGACcauuuuguauGCGugGACGGCAGGAUCGu -3'
miRNA:   3'- cuGCUGc---------UGCugCUGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 133755 0.68 0.998037
Target:  5'- aGACGGuCGAgaaugggucauCGACGugGACA---UCGAa -3'
miRNA:   3'- -CUGCU-GCU-----------GCUGCugCUGUuuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 48037 0.68 0.997217
Target:  5'- cACGAuCGucccGCGGCGACGcGCGAucGAUCGAu -3'
miRNA:   3'- cUGCU-GC----UGCUGCUGC-UGUU--UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 99049 0.68 0.997217
Target:  5'- uGugGACGAUGACucggaaaaucugGGCGaACGGAGcUCGAg -3'
miRNA:   3'- -CugCUGCUGCUG------------CUGC-UGUUUU-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 37372 0.68 0.997217
Target:  5'- -uCGcCGGUGGCGGCGACAAAgaugucGUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUUU------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 109019 0.69 0.996132
Target:  5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 130740 0.67 0.999083
Target:  5'- aGCGAUGACGAUcgaGAUGGguAuGUCGAg -3'
miRNA:   3'- cUGCUGCUGCUG---CUGCUguUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 91976 0.67 0.999252
Target:  5'- aGGCGGCGcucaaGCGGCGGacaauacaGACGcAGGUCGAc -3'
miRNA:   3'- -CUGCUGC-----UGCUGCUg-------CUGU-UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 125014 0.67 0.999252
Target:  5'- aGCu-CGAUGuuCGACGugAAAGUCGAu -3'
miRNA:   3'- cUGcuGCUGCu-GCUGCugUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 84314 0.67 0.999252
Target:  5'- uGAUGAUGAUGAUGAUGAUgu-AUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGuuuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 117866 0.66 0.999394
Target:  5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3'
miRNA:   3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 41559 0.66 0.999512
Target:  5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3'
miRNA:   3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 95487 0.66 0.999609
Target:  5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3'
miRNA:   3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 64690 0.66 0.999689
Target:  5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3'
miRNA:   3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5'
32575 5' -48.4 NC_007151.1 + 105954 1.1 0.017363
Target:  5'- aGACGACGACGACGACGACAAAAUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.