miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 51621 0.74 0.916281
Target:  5'- aACGACGACGAaaGCGAagauGAAUCGAu -3'
miRNA:   3'- cUGCUGCUGCUgcUGCUgu--UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 54766 0.73 0.955969
Target:  5'- --gGACGACGACGACGuauCAAuccGAUCa- -3'
miRNA:   3'- cugCUGCUGCUGCUGCu--GUU---UUAGcu -5'
32575 5' -48.4 NC_007151.1 + 54840 0.7 0.99066
Target:  5'- -cCGuCGGCGACGAUGGCAccgccuucgcAGUCGAa -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUu---------UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 54912 0.69 0.9948
Target:  5'- gGACGuauuCGACGuaaauggguuuaaaGGCGGCGGAAUCGGa -3'
miRNA:   3'- -CUGCu---GCUGCug------------CUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 55067 0.7 0.987868
Target:  5'- uGCGGCGGCGGCGGUGuCGAcGUCGu -3'
miRNA:   3'- cUGCUGCUGCUGCUGCuGUUuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 56048 0.75 0.897204
Target:  5'- aGGCGACGACauCGACGGCcguagAAAAUCGGa -3'
miRNA:   3'- -CUGCUGCUGcuGCUGCUG-----UUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 58744 0.72 0.969926
Target:  5'- aACGACGGCGGCG-CGA----GUCGAg -3'
miRNA:   3'- cUGCUGCUGCUGCuGCUguuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 62591 0.7 0.98625
Target:  5'- cGCGaucaGCGcCGGCGAUGACAAAAUUGc -3'
miRNA:   3'- cUGC----UGCuGCUGCUGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 64690 0.66 0.999689
Target:  5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3'
miRNA:   3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5'
32575 5' -48.4 NC_007151.1 + 69927 0.72 0.963411
Target:  5'- cGACGACGGaGAUGACGuguuUAAAAUCGu -3'
miRNA:   3'- -CUGCUGCUgCUGCUGCu---GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 74026 0.81 0.627293
Target:  5'- aGAUGACGACGAaGACGACGAAGaUGAa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 77065 0.7 0.99066
Target:  5'- -cCGACaGCGAUGACGACAGcagCGGc -3'
miRNA:   3'- cuGCUGcUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 77177 0.78 0.775559
Target:  5'- aACGACGAgGACGACGAgAuaagaaaggacacacGAGUCGAu -3'
miRNA:   3'- cUGCUGCUgCUGCUGCUgU---------------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 77202 0.7 0.989335
Target:  5'- --aGACGAaGACGACGACGAAGa--- -3'
miRNA:   3'- cugCUGCUgCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 77342 0.68 0.997217
Target:  5'- -cCGACGAUGGuCGACGaACGAGAcUGAu -3'
miRNA:   3'- cuGCUGCUGCU-GCUGC-UGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 82983 0.66 0.999609
Target:  5'- -uCGACGACGAUaGCGAgAAAAU-GAa -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUgUUUUAgCU- -5'
32575 5' -48.4 NC_007151.1 + 83406 0.69 0.995471
Target:  5'- aACGAcaaagcCGACGAUGGCGAUAuAAUCu- -3'
miRNA:   3'- cUGCU------GCUGCUGCUGCUGUuUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 84314 0.67 0.999252
Target:  5'- uGAUGAUGAUGAUGAUGAUgu-AUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGuuuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 87811 0.69 0.992612
Target:  5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3'
miRNA:   3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.