miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 33874 0.73 0.938153
Target:  5'- cGAUGACGAUuACGACGACGcGA-CGAg -3'
miRNA:   3'- -CUGCUGCUGcUGCUGCUGUuUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 36306 0.82 0.595571
Target:  5'- cGGCGGCGAUGACGAUGGCAA---CGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 36383 0.69 0.994478
Target:  5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3'
miRNA:   3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 37372 0.68 0.997217
Target:  5'- -uCGcCGGUGGCGGCGACAAAgaugucGUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUUU------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 37375 0.83 0.512763
Target:  5'- cGACGACaguaguuuucgaGACGAUGACGAUAAAGUUGAg -3'
miRNA:   3'- -CUGCUG------------CUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 40062 0.66 0.999512
Target:  5'- --gGAUGugGaACGAauACAAAAUCGAa -3'
miRNA:   3'- cugCUGCugC-UGCUgcUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41193 0.67 0.999252
Target:  5'- ---aGCGACGcCGcCGGCAAAGUCGu -3'
miRNA:   3'- cugcUGCUGCuGCuGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 41354 0.75 0.903814
Target:  5'- cGGCGGCGuCGcuaACGACGGCGGucUCGAg -3'
miRNA:   3'- -CUGCUGCuGC---UGCUGCUGUUuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41483 0.78 0.771685
Target:  5'- uGACGACGAUGAaGACGAUGAAggCGGa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 41559 0.66 0.999512
Target:  5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3'
miRNA:   3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 43659 0.66 0.999689
Target:  5'- aAUGuCGACGACGGCG-CGuuAGUCGu -3'
miRNA:   3'- cUGCuGCUGCUGCUGCuGUu-UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 44431 0.89 0.267963
Target:  5'- gGGCGGCGACGACGACGACAaggcaaAAAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU------UUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 44668 0.82 0.574552
Target:  5'- cGACGACGACGACGAaaaugaUGGCAAuGUCGu -3'
miRNA:   3'- -CUGCUGCUGCUGCU------GCUGUUuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 44801 0.72 0.959808
Target:  5'- -uCGACGGCGGCGAUGAagauGUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCUguuuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 45880 0.72 0.969926
Target:  5'- cGCGACGGCucGCGAgUGGCAAAAUCGu -3'
miRNA:   3'- cUGCUGCUGc-UGCU-GCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 46508 0.66 0.999689
Target:  5'- cACGACaACGGacuCGugGACAucagcGGAUCGAu -3'
miRNA:   3'- cUGCUGcUGCU---GCugCUGU-----UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 47820 0.68 0.997657
Target:  5'- cGACGGCucgGACGaucgccucGCGGCGAUucauGAUCGAu -3'
miRNA:   3'- -CUGCUG---CUGC--------UGCUGCUGuu--UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 47875 0.72 0.963411
Target:  5'- cGCGG-GACGAuCGugGAUGGAGUCGAc -3'
miRNA:   3'- cUGCUgCUGCU-GCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 48037 0.68 0.997217
Target:  5'- cACGAuCGucccGCGGCGACGcGCGAucGAUCGAu -3'
miRNA:   3'- cUGCU-GC----UGCUGCUGC-UGUU--UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 48947 0.7 0.989335
Target:  5'- cACGAUGGuCGAUGACGACGGccAAUUGu -3'
miRNA:   3'- cUGCUGCU-GCUGCUGCUGUU--UUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.