miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 109019 0.69 0.996132
Target:  5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 107582 0.71 0.98447
Target:  5'- -uCGGCaACGuCGACGACAAcGUCGGc -3'
miRNA:   3'- cuGCUGcUGCuGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 105954 1.1 0.017363
Target:  5'- aGACGACGACGACGACGACAAAAUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 103642 0.76 0.844278
Target:  5'- -uCGuCGACGACGACGAgAGAauuAUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUgUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 103289 0.86 0.372999
Target:  5'- cGACGAUGACGAUGACGACAGAGa--- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 100523 0.67 0.998881
Target:  5'- -uUGACcauuuuguauGCGugGACGGCAGGAUCGu -3'
miRNA:   3'- cuGCUGc---------UGCugCUGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 99049 0.68 0.997217
Target:  5'- uGugGACGAUGACucggaaaaucugGGCGaACGGAGcUCGAg -3'
miRNA:   3'- -CugCUGCUGCUG------------CUGC-UGUUUU-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 97715 0.66 0.999394
Target:  5'- -uCGGCGGCaGCGAC-ACAAAcUCGAu -3'
miRNA:   3'- cuGCUGCUGcUGCUGcUGUUUuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 97047 0.69 0.995471
Target:  5'- cACGcCGAccuCGGCGAUGgGCAGGAUCGGa -3'
miRNA:   3'- cUGCuGCU---GCUGCUGC-UGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 95487 0.66 0.999609
Target:  5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3'
miRNA:   3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 94716 0.66 0.999755
Target:  5'- -cCGAUGACGAUuAUGAUGAAggcGUCGAc -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 94131 0.7 0.99066
Target:  5'- -cCGGCGGucuUGGCGAUGGCGAucUCGAg -3'
miRNA:   3'- cuGCUGCU---GCUGCUGCUGUUuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 93979 0.7 0.98625
Target:  5'- -cCGGCGACGA-GACGACAuucuUUGAu -3'
miRNA:   3'- cuGCUGCUGCUgCUGCUGUuuu-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 93061 0.78 0.752009
Target:  5'- uGCGACGuCGACGACGACGAuggCGc -3'
miRNA:   3'- cUGCUGCuGCUGCUGCUGUUuuaGCu -5'
32575 5' -48.4 NC_007151.1 + 91976 0.67 0.999252
Target:  5'- aGGCGGCGcucaaGCGGCGGacaauacaGACGcAGGUCGAc -3'
miRNA:   3'- -CUGCUGC-----UGCUGCUg-------CUGU-UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 91908 0.66 0.999394
Target:  5'- aGCGACGACGcccgccCGAUGAUc--GUCGAc -3'
miRNA:   3'- cUGCUGCUGCu-----GCUGCUGuuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 90294 0.74 0.927729
Target:  5'- -uCGACGAUGGCGuCGACGAGcGUUGAc -3'
miRNA:   3'- cuGCUGCUGCUGCuGCUGUUU-UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 89876 0.92 0.178617
Target:  5'- cGGCGACGACGACGACGACAAcaaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 87811 0.69 0.992612
Target:  5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3'
miRNA:   3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.