miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 142387 0.75 0.903814
Target:  5'- -gUGACGACGAUaGCGACAAGGaCGAg -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 140541 0.8 0.648475
Target:  5'- gGACGAuCGuCGGCGugGAUGGAGUCGAc -3'
miRNA:   3'- -CUGCU-GCuGCUGCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 140381 0.68 0.996711
Target:  5'- cGACGAuCGucccGCGGCGACGcGCGAucguUCGAu -3'
miRNA:   3'- -CUGCU-GC----UGCUGCUGC-UGUUuu--AGCU- -5'
32575 5' -48.4 NC_007151.1 + 138374 0.66 0.999689
Target:  5'- aACGAUGA-GGCG-CGACccAAUCGAa -3'
miRNA:   3'- cUGCUGCUgCUGCuGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 134202 0.68 0.997657
Target:  5'- cGACGACauaaGCGucguCGACGAUAAAGgccgCGAa -3'
miRNA:   3'- -CUGCUGc---UGCu---GCUGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 134138 0.72 0.966781
Target:  5'- cGACuACGGCGGCGcCGACAGAAccgcCGAu -3'
miRNA:   3'- -CUGcUGCUGCUGCuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 133755 0.68 0.998037
Target:  5'- aGACGGuCGAgaaugggucauCGACGugGACA---UCGAa -3'
miRNA:   3'- -CUGCU-GCU-----------GCUGCugCUGUuuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 132434 0.82 0.553709
Target:  5'- aGCGACGACGACGACGACca---CGAc -3'
miRNA:   3'- cUGCUGCUGCUGCUGCUGuuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 130740 0.67 0.999083
Target:  5'- aGCGAUGACGAUcgaGAUGGguAuGUCGAg -3'
miRNA:   3'- cUGCUGCUGCUG---CUGCUguUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 127342 0.75 0.903814
Target:  5'- cGAUGGCGAucacgggcUGGCGACGACGAAcaggaguaGUCGGa -3'
miRNA:   3'- -CUGCUGCU--------GCUGCUGCUGUUU--------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 127018 0.98 0.088865
Target:  5'- uGACGACGACGACGACGACAGugaagauGUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUu------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 126212 0.95 0.133544
Target:  5'- cGACGGCGGCGGCGGCGGCGAcGUCGGc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 125014 0.67 0.999252
Target:  5'- aGCu-CGAUGuuCGACGugAAAGUCGAu -3'
miRNA:   3'- cUGcuGCUGCu-GCUGCugUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 123440 0.73 0.938153
Target:  5'- -uCGACGGCGGCuuucuaGACGACA--AUCGAc -3'
miRNA:   3'- cuGCUGCUGCUG------CUGCUGUuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 123270 0.7 0.98625
Target:  5'- uACGuCGACGACGuCGACuucaaucAUCGAg -3'
miRNA:   3'- cUGCuGCUGCUGCuGCUGuuu----UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 123070 0.78 0.771685
Target:  5'- uGACGACGACaACGACGACAGcacAGaCGAc -3'
miRNA:   3'- -CUGCUGCUGcUGCUGCUGUU---UUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 120224 0.73 0.942983
Target:  5'- cACGAUGACGuCGGCGGCAg---CGAa -3'
miRNA:   3'- cUGCUGCUGCuGCUGCUGUuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 119104 0.66 0.999512
Target:  5'- gGGCGAauUGACGACGGauuuaaGACGAuuAUUGAa -3'
miRNA:   3'- -CUGCU--GCUGCUGCUg-----CUGUUu-UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 117866 0.66 0.999394
Target:  5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3'
miRNA:   3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 115356 0.73 0.94756
Target:  5'- -cCGACG-UGACGaACGGCAGAGUUGGg -3'
miRNA:   3'- cuGCUGCuGCUGC-UGCUGUUUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.