miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 107582 0.71 0.98447
Target:  5'- -uCGGCaACGuCGACGACAAcGUCGGc -3'
miRNA:   3'- cuGCUGcUGCuGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 54766 0.73 0.955969
Target:  5'- --gGACGACGACGACGuauCAAuccGAUCa- -3'
miRNA:   3'- cugCUGCUGCUGCUGCu--GUU---UUAGcu -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 47875 0.72 0.963411
Target:  5'- cGCGG-GACGAuCGugGAUGGAGUCGAc -3'
miRNA:   3'- cUGCUgCUGCU-GCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 69927 0.72 0.963411
Target:  5'- cGACGACGGaGAUGACGuguuUAAAAUCGu -3'
miRNA:   3'- -CUGCUGCUgCUGCUGCu---GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 4680 0.72 0.966781
Target:  5'- --gGGCGGCGGCGAUGGCGuccAUCGc -3'
miRNA:   3'- cugCUGCUGCUGCUGCUGUuu-UAGCu -5'
32575 5' -48.4 NC_007151.1 + 134138 0.72 0.966781
Target:  5'- cGACuACGGCGGCGcCGACAGAAccgcCGAu -3'
miRNA:   3'- -CUGcUGCUGCUGCuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 1877 0.72 0.969926
Target:  5'- cAUGACGAcucugucucCGAUGACGGCAuugccaAAGUCGAg -3'
miRNA:   3'- cUGCUGCU---------GCUGCUGCUGU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 120224 0.73 0.942983
Target:  5'- cACGAUGACGuCGGCGGCAg---CGAa -3'
miRNA:   3'- cUGCUGCUGCuGCUGCUGUuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 90294 0.74 0.927729
Target:  5'- -uCGACGAUGGCGuCGACGAGcGUUGAc -3'
miRNA:   3'- cuGCUGCUGCUGCuGCUGUUU-UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 1283 0.74 0.916281
Target:  5'- cGGCGGUGGCGGCGGUGGCGgugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 16984 0.96 0.11057
Target:  5'- uGACGACGACGACGACGACAGAAaaGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 126212 0.95 0.133544
Target:  5'- cGACGGCGGCGGCGGCGGCGAcGUCGGc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 27559 0.95 0.137165
Target:  5'- aGACGACGACGACGACGACGGuacAAUCGu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUU---UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 89876 0.92 0.178617
Target:  5'- cGGCGACGACGACGACGACAAcaaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 37375 0.83 0.512763
Target:  5'- cGACGACaguaguuuucgaGACGAUGACGAUAAAGUUGAg -3'
miRNA:   3'- -CUGCUG------------CUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41483 0.78 0.771685
Target:  5'- uGACGACGAUGAaGACGAUGAAggCGGa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 103642 0.76 0.844278
Target:  5'- -uCGuCGACGACGACGAgAGAauuAUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUgUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 56048 0.75 0.897204
Target:  5'- aGGCGACGACauCGACGGCcguagAAAAUCGGa -3'
miRNA:   3'- -CUGCUGCUGcuGCUGCUG-----UUUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.