miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 33716 0.78 0.781328
Target:  5'- gGACGAUGACGACaAUGACuauGUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGcUGCUGuuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 29882 0.76 0.844278
Target:  5'- aGAUGACGuCGACGACGACg----CGAg -3'
miRNA:   3'- -CUGCUGCuGCUGCUGCUGuuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 103642 0.76 0.844278
Target:  5'- -uCGuCGACGACGACGAgAGAauuAUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUgUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 56048 0.75 0.897204
Target:  5'- aGGCGACGACauCGACGGCcguagAAAAUCGGa -3'
miRNA:   3'- -CUGCUGCUGcuGCUGCUG-----UUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 127342 0.75 0.903814
Target:  5'- cGAUGGCGAucacgggcUGGCGACGACGAAcaggaguaGUCGGa -3'
miRNA:   3'- -CUGCUGCU--------GCUGCUGCUGUUU--------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41354 0.75 0.903814
Target:  5'- cGGCGGCGuCGcuaACGACGGCGGucUCGAg -3'
miRNA:   3'- -CUGCUGCuGC---UGCUGCUGUUuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 142387 0.75 0.903814
Target:  5'- -gUGACGACGAUaGCGACAAGGaCGAg -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 51621 0.74 0.916281
Target:  5'- aACGACGACGAaaGCGAagauGAAUCGAu -3'
miRNA:   3'- cUGCUGCUGCUgcUGCUgu--UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 1283 0.74 0.916281
Target:  5'- cGGCGGUGGCGGCGGUGGCGgugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 90294 0.74 0.927729
Target:  5'- -uCGACGAUGGCGuCGACGAGcGUUGAc -3'
miRNA:   3'- cuGCUGCUGCUGCuGCUGUUU-UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 33874 0.73 0.938153
Target:  5'- cGAUGACGAUuACGACGACGcGA-CGAg -3'
miRNA:   3'- -CUGCUGCUGcUGCUGCUGUuUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 123440 0.73 0.938153
Target:  5'- -uCGACGGCGGCuuucuaGACGACA--AUCGAc -3'
miRNA:   3'- cuGCUGCUGCUG------CUGCUGUuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 120224 0.73 0.942983
Target:  5'- cACGAUGACGuCGGCGGCAg---CGAa -3'
miRNA:   3'- cUGCUGCUGCuGCUGCUGUuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 115356 0.73 0.94756
Target:  5'- -cCGACG-UGACGaACGGCAGAGUUGGg -3'
miRNA:   3'- cuGCUGCuGCUGC-UGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 54766 0.73 0.955969
Target:  5'- --gGACGACGACGACGuauCAAuccGAUCa- -3'
miRNA:   3'- cugCUGCUGCUGCUGCu--GUU---UUAGcu -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 44801 0.72 0.959808
Target:  5'- -uCGACGGCGGCGAUGAagauGUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCUguuuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 30609 0.72 0.963411
Target:  5'- uACGuCGGCGACGAUGAgAaugcggAAAUCGAc -3'
miRNA:   3'- cUGCuGCUGCUGCUGCUgU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 69927 0.72 0.963411
Target:  5'- cGACGACGGaGAUGACGuguuUAAAAUCGu -3'
miRNA:   3'- -CUGCUGCUgCUGCUGCu---GUUUUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.