miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32580 5' -43.1 NC_007151.1 + 124924 1.08 0.05194
Target:  5'- gACAUCGAAGCAAAUCUGGCAAAAUAUa -3'
miRNA:   3'- -UGUAGCUUCGUUUAGACCGUUUUAUA- -5'
32580 5' -43.1 NC_007151.1 + 15485 0.77 0.967128
Target:  5'- gGCaAUCGAAGCAAAUCUugcGGCAAcAAUAg -3'
miRNA:   3'- -UG-UAGCUUCGUUUAGA---CCGUU-UUAUa -5'
32580 5' -43.1 NC_007151.1 + 2077 0.71 0.999426
Target:  5'- ---cCGAAgGUAAAUUUGGCAAAGUGUc -3'
miRNA:   3'- uguaGCUU-CGUUUAGACCGUUUUAUA- -5'
32580 5' -43.1 NC_007151.1 + 146284 0.71 0.999547
Target:  5'- gAUAUCGAuggaaaaauccGCAAGUCUGGCAAc---- -3'
miRNA:   3'- -UGUAGCUu----------CGUUUAGACCGUUuuaua -5'
32580 5' -43.1 NC_007151.1 + 65900 0.7 0.999838
Target:  5'- cACAUCGGccGGCAGAUUUuGUAAAAUAUu -3'
miRNA:   3'- -UGUAGCU--UCGUUUAGAcCGUUUUAUA- -5'
32580 5' -43.1 NC_007151.1 + 110426 0.68 0.999981
Target:  5'- uCAUCG--GCAuGUCUGGCGAAGa-- -3'
miRNA:   3'- uGUAGCuuCGUuUAGACCGUUUUaua -5'
32580 5' -43.1 NC_007151.1 + 55502 0.68 0.999991
Target:  5'- --cUCGAAuCGAAUCUGGCAAu---- -3'
miRNA:   3'- uguAGCUUcGUUUAGACCGUUuuaua -5'
32580 5' -43.1 NC_007151.1 + 31572 0.67 0.999998
Target:  5'- aGCGUCGgcGcCAGAggCUGGgAGAAUAa -3'
miRNA:   3'- -UGUAGCuuC-GUUUa-GACCgUUUUAUa -5'
32580 5' -43.1 NC_007151.1 + 137140 0.66 1
Target:  5'- uGCAUCGcaauAGCAAA---GGCGAAAUAc -3'
miRNA:   3'- -UGUAGCu---UCGUUUagaCCGUUUUAUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.