miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32771 5' -48.1 NC_007346.1 + 49995 0.72 0.999121
Target:  5'- uGGCGAUgGUgGUggugGCGAUGGCGAg- -3'
miRNA:   3'- gCUGCUAgUAgCAa---UGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 87082 0.66 1
Target:  5'- gCGACG-UCGUUGUcgaGCGACG-CGAa- -3'
miRNA:   3'- -GCUGCuAGUAGCAa--UGCUGCuGCUag -5'
32771 5' -48.1 NC_007346.1 + 109417 0.79 0.943957
Target:  5'- aCGAUGAUCGUCGU--CGuaACGAUGAUCg -3'
miRNA:   3'- -GCUGCUAGUAGCAauGC--UGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 109450 0.83 0.795895
Target:  5'- aCGAUGAUCGUCGUggACGgggucGCGAUGAUCg -3'
miRNA:   3'- -GCUGCUAGUAGCAa-UGC-----UGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 109855 1.13 0.033527
Target:  5'- aCGACGAUCAUCGUUACGACGACGAUCa -3'
miRNA:   3'- -GCUGCUAGUAGCAAUGCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 109894 0.82 0.829792
Target:  5'- aCGACGAUCAUCGcgACcccguccACGACGAUCa -3'
miRNA:   3'- -GCUGCUAGUAGCaaUGc------UGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 125582 0.69 0.999974
Target:  5'- uGACGAUgAUgacgACGACGACGAa- -3'
miRNA:   3'- gCUGCUAgUAgcaaUGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 128248 0.75 0.991917
Target:  5'- uGGCGGUgAUgGUggcgGCGGCGACGGUg -3'
miRNA:   3'- gCUGCUAgUAgCAa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 128329 0.66 0.999999
Target:  5'- uGGCGAUgGUgGcgAUGGCGAUGGUg -3'
miRNA:   3'- gCUGCUAgUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 138087 0.71 0.999683
Target:  5'- gGGCGuUCAcUCGggcgGCGGCGGCGGUg -3'
miRNA:   3'- gCUGCuAGU-AGCaa--UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 165332 0.69 0.999974
Target:  5'- aUGACGAUgA-CGaugACGAUGAUGGUCu -3'
miRNA:   3'- -GCUGCUAgUaGCaa-UGCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 165566 0.68 0.999981
Target:  5'- uGGCGAagGUgGcgGCGAUGGCGAUg -3'
miRNA:   3'- gCUGCUagUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 187651 0.69 0.999923
Target:  5'- aUGACGAaacgcauaGUCGUUAccCGAUGAUGGUCu -3'
miRNA:   3'- -GCUGCUag------UAGCAAU--GCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 188007 0.7 0.999874
Target:  5'- uGACGGggGUgGggGCGACGGCGGa- -3'
miRNA:   3'- gCUGCUagUAgCaaUGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 188079 0.66 1
Target:  5'- gGGCGG-CggCGUggGCGGCGGCGGa- -3'
miRNA:   3'- gCUGCUaGuaGCAa-UGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 188398 0.7 0.999839
Target:  5'- gCGGCGAUgG-CGgagGCGGCGAUGGUg -3'
miRNA:   3'- -GCUGCUAgUaGCaa-UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 188903 0.71 0.999406
Target:  5'- uGGCGGUgAUgGUgGCGGCGAUGGUg -3'
miRNA:   3'- gCUGCUAgUAgCAaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 189461 0.7 0.999861
Target:  5'- uGACGGUgGUgGUggugacgguggugGCGGCGACGGUg -3'
miRNA:   3'- gCUGCUAgUAgCAa------------UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 189927 0.68 0.999992
Target:  5'- gCGGCGGUgAUgGUggcgGUGACGGCGAUg -3'
miRNA:   3'- -GCUGCUAgUAgCAa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 197637 0.66 0.999999
Target:  5'- uGAUGGUgGUgGcgaugGCGGCGGCGAUg -3'
miRNA:   3'- gCUGCUAgUAgCaa---UGCUGCUGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.