miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32771 5' -48.1 NC_007346.1 + 109450 0.83 0.795895
Target:  5'- aCGAUGAUCGUCGUggACGgggucGCGAUGAUCg -3'
miRNA:   3'- -GCUGCUAGUAGCAa-UGC-----UGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 238245 0.66 1
Target:  5'- gCGGCGu--GUCGgugacugGCGACGGCGGcUCa -3'
miRNA:   3'- -GCUGCuagUAGCaa-----UGCUGCUGCU-AG- -5'
32771 5' -48.1 NC_007346.1 + 364650 0.66 1
Target:  5'- -uGCGAacucUCAUUGaUAUGGCGGcCGAUCg -3'
miRNA:   3'- gcUGCU----AGUAGCaAUGCUGCU-GCUAG- -5'
32771 5' -48.1 NC_007346.1 + 87082 0.66 1
Target:  5'- gCGACG-UCGUUGUcgaGCGACG-CGAa- -3'
miRNA:   3'- -GCUGCuAGUAGCAa--UGCUGCuGCUag -5'
32771 5' -48.1 NC_007346.1 + 49995 0.72 0.999121
Target:  5'- uGGCGAUgGUgGUggugGCGAUGGCGAg- -3'
miRNA:   3'- gCUGCUAgUAgCAa---UGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 198785 0.71 0.999683
Target:  5'- uGAUGGUgGUgGggGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 272615 0.69 0.999955
Target:  5'- uGGCGA-CGUgUGUUucgGCGACGACGGUg -3'
miRNA:   3'- gCUGCUaGUA-GCAA---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 125582 0.69 0.999974
Target:  5'- uGACGAUgAUgacgACGACGACGAa- -3'
miRNA:   3'- gCUGCUAgUAgcaaUGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 197808 0.68 0.999981
Target:  5'- aGGCGAUgGUggCGgugGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUA--GCaa-UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 197637 0.66 0.999999
Target:  5'- uGAUGGUgGUgGcgaugGCGGCGGCGAUg -3'
miRNA:   3'- gCUGCUAgUAgCaa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 238339 0.67 0.999997
Target:  5'- uGGCGGcUCAUC--UGCGAcCGGCGAUg -3'
miRNA:   3'- gCUGCU-AGUAGcaAUGCU-GCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 197778 0.68 0.999981
Target:  5'- aGGCGAUgGUggCGgugGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUA--GCaa-UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 109417 0.79 0.943957
Target:  5'- aCGAUGAUCGUCGU--CGuaACGAUGAUCg -3'
miRNA:   3'- -GCUGCUAGUAGCAauGC--UGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 198399 0.66 0.999999
Target:  5'- uGAUGGUgGUgGagGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 280784 0.75 0.986752
Target:  5'- cCGACGGauaugCAUCGUgugaUACGGCGAUGGUg -3'
miRNA:   3'- -GCUGCUa----GUAGCA----AUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 165566 0.68 0.999981
Target:  5'- uGGCGAagGUgGcgGCGAUGGCGAUg -3'
miRNA:   3'- gCUGCUagUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 249009 0.66 0.999999
Target:  5'- uCGACGAUgGUUGcgguaACGGCGGCGuAUUu -3'
miRNA:   3'- -GCUGCUAgUAGCaa---UGCUGCUGC-UAG- -5'
32771 5' -48.1 NC_007346.1 + 312620 0.66 1
Target:  5'- aGAaaAUCAcUUGU--CGACGACGAUCg -3'
miRNA:   3'- gCUgcUAGU-AGCAauGCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 197748 0.73 0.99704
Target:  5'- aGGCGAUgGUgGUggugGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUAgCAa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 258802 0.7 0.999901
Target:  5'- uCGACGGuuUCGUCGaugggcAUGGCGACGAa- -3'
miRNA:   3'- -GCUGCU--AGUAGCaa----UGCUGCUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.