miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32773 3' -58.6 NC_007346.1 + 4977 0.74 0.601013
Target:  5'- aUUGCCGCAGAUGccgccucgcGUGCGGCAGaCAUg -3'
miRNA:   3'- aGGCGGCGUCUAC---------CACGUCGUC-GUGg -5'
32773 3' -58.6 NC_007346.1 + 56328 0.71 0.768556
Target:  5'- gCCGCCGCacuuugucugggGGAcGGUGCAcuuggagcacuuGguGCACCc -3'
miRNA:   3'- aGGCGGCG------------UCUaCCACGU------------CguCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 56677 0.7 0.77726
Target:  5'- gUCCaGgCGguGGUGGUGgAGCAGgAUCa -3'
miRNA:   3'- -AGG-CgGCguCUACCACgUCGUCgUGG- -5'
32773 3' -58.6 NC_007346.1 + 73596 0.67 0.934253
Target:  5'- cUCGCCugGUAGGgacgggauUGGUGCAGaauauGCACCu -3'
miRNA:   3'- aGGCGG--CGUCU--------ACCACGUCgu---CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 92819 0.67 0.914093
Target:  5'- uUCCGCuCGU-GAUGGgGCAcCGGCAUCu -3'
miRNA:   3'- -AGGCG-GCGuCUACCaCGUcGUCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 127967 0.66 0.947214
Target:  5'- gCCGCCGCcuccaccAUGGU--GGCAgGCGCCa -3'
miRNA:   3'- aGGCGGCGuc-----UACCAcgUCGU-CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 128010 0.66 0.951128
Target:  5'- cUCGgCGguGGUGGacucgGCGGCGuugcauauGCACCa -3'
miRNA:   3'- aGGCgGCguCUACCa----CGUCGU--------CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 128018 0.66 0.947214
Target:  5'- gCCGCCGCcuccaccAUGGU--GGCAgGCGCCa -3'
miRNA:   3'- aGGCGGCGuc-----UACCAcgUCGU-CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 128249 0.67 0.919443
Target:  5'- -gUGgCGguGAUGGUgGCGGCGGCGa- -3'
miRNA:   3'- agGCgGCguCUACCA-CGUCGUCGUgg -5'
32773 3' -58.6 NC_007346.1 + 135130 0.68 0.877759
Target:  5'- aCCGCCGguGgcGGUGgAuCGGaCGCCu -3'
miRNA:   3'- aGGCGGCguCuaCCACgUcGUC-GUGG- -5'
32773 3' -58.6 NC_007346.1 + 137421 0.67 0.93379
Target:  5'- gCCGCCacucGCGGcAUGGcugguucUGCGGCGGgUGCCa -3'
miRNA:   3'- aGGCGG----CGUC-UACC-------ACGUCGUC-GUGG- -5'
32773 3' -58.6 NC_007346.1 + 137844 0.71 0.76768
Target:  5'- -aUGCCGCGaGUGGcggcccaUGCAGCGGCAgCg -3'
miRNA:   3'- agGCGGCGUcUACC-------ACGUCGUCGUgG- -5'
32773 3' -58.6 NC_007346.1 + 139791 0.7 0.77726
Target:  5'- aUCUGCaucgcgaGUAGAUGGUGCuaauGCuGCugCa -3'
miRNA:   3'- -AGGCGg------CGUCUACCACGu---CGuCGugG- -5'
32773 3' -58.6 NC_007346.1 + 156086 0.71 0.732764
Target:  5'- --aGCaGCAGcgGGUGCuGCuGCACCa -3'
miRNA:   3'- aggCGgCGUCuaCCACGuCGuCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 156529 1.11 0.003269
Target:  5'- aUCCGCCGCAGAUGGUGCAGCAGCACCc -3'
miRNA:   3'- -AGGCGGCGUCUACCACGUCGUCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 167294 0.67 0.929523
Target:  5'- gCCGCgGCAGGauaUGGUGaucaGGUAGU-CCg -3'
miRNA:   3'- aGGCGgCGUCU---ACCACg---UCGUCGuGG- -5'
32773 3' -58.6 NC_007346.1 + 169478 0.73 0.639026
Target:  5'- aUCgGUauCGCAGuUGGUGCAGCcGCACUu -3'
miRNA:   3'- -AGgCG--GCGUCuACCACGUCGuCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 170949 0.66 0.943097
Target:  5'- aUCCGUCGCAGuguaaaaacuUGGUcGCGGaugucgaaGGCACg -3'
miRNA:   3'- -AGGCGGCGUCu---------ACCA-CGUCg-------UCGUGg -5'
32773 3' -58.6 NC_007346.1 + 201147 0.7 0.77726
Target:  5'- -gCGgUGCAGAUGGUGguGCagauGGUACUg -3'
miRNA:   3'- agGCgGCGUCUACCACguCG----UCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 206639 0.66 0.951128
Target:  5'- --aGUCGCGGAUGcGaccGCAGUGGCGCg -3'
miRNA:   3'- aggCGGCGUCUAC-Ca--CGUCGUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.