miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32773 3' -58.6 NC_007346.1 + 56677 0.7 0.77726
Target:  5'- gUCCaGgCGguGGUGGUGgAGCAGgAUCa -3'
miRNA:   3'- -AGG-CgGCguCUACCACgUCGUCgUGG- -5'
32773 3' -58.6 NC_007346.1 + 401086 0.71 0.732764
Target:  5'- gCUGCCGC-GAUGGcagcugcagGCGGCGguGCACCu -3'
miRNA:   3'- aGGCGGCGuCUACCa--------CGUCGU--CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 156086 0.71 0.732764
Target:  5'- --aGCaGCAGcgGGUGCuGCuGCACCa -3'
miRNA:   3'- aggCGgCGUCuaCCACGuCGuCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 169478 0.73 0.639026
Target:  5'- aUCgGUauCGCAGuUGGUGCAGCcGCACUu -3'
miRNA:   3'- -AGgCG--GCGUCuACCACGUCGuCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 380444 0.67 0.924586
Target:  5'- cCCGUCGUuuauuGAUGGUGguGgcgauacugaccCAGCAUCu -3'
miRNA:   3'- aGGCGGCGu----CUACCACguC------------GUCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 364522 0.67 0.919443
Target:  5'- uUCCGaCCGCGGGcugUGG-GguGaCAGCAUg -3'
miRNA:   3'- -AGGC-GGCGUCU---ACCaCguC-GUCGUGg -5'
32773 3' -58.6 NC_007346.1 + 387382 0.66 0.954844
Target:  5'- aUCCGCUGCuGcUGGUGUauauGGCAuuGCAUUu -3'
miRNA:   3'- -AGGCGGCGuCuACCACG----UCGU--CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 127967 0.66 0.947214
Target:  5'- gCCGCCGCcuccaccAUGGU--GGCAgGCGCCa -3'
miRNA:   3'- aGGCGGCGuc-----UACCAcgUCGU-CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 170949 0.66 0.943097
Target:  5'- aUCCGUCGCAGuguaaaaacuUGGUcGCGGaugucgaaGGCACg -3'
miRNA:   3'- -AGGCGGCGUCu---------ACCA-CGUCg-------UCGUGg -5'
32773 3' -58.6 NC_007346.1 + 137421 0.67 0.93379
Target:  5'- gCCGCCacucGCGGcAUGGcugguucUGCGGCGGgUGCCa -3'
miRNA:   3'- aGGCGG----CGUC-UACC-------ACGUCGUC-GUGG- -5'
32773 3' -58.6 NC_007346.1 + 280028 0.69 0.849718
Target:  5'- cCUGCCGCGcgcGAaacgGGUGCAaCuGCACCg -3'
miRNA:   3'- aGGCGGCGU---CUa---CCACGUcGuCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 128018 0.66 0.947214
Target:  5'- gCCGCCGCcuccaccAUGGU--GGCAgGCGCCa -3'
miRNA:   3'- aGGCGGCGuc-----UACCAcgUCGU-CGUGG- -5'
32773 3' -58.6 NC_007346.1 + 292184 0.68 0.871022
Target:  5'- gCUGCCccggugGCGGGUucgucaGGUGCGGCAGCGa- -3'
miRNA:   3'- aGGCGG------CGUCUA------CCACGUCGUCGUgg -5'
32773 3' -58.6 NC_007346.1 + 274016 0.66 0.938778
Target:  5'- gCCGCCGUguuuucgcGGUGCucgcgaaguGCAGCAUCg -3'
miRNA:   3'- aGGCGGCGucua----CCACGu--------CGUCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 206639 0.66 0.951128
Target:  5'- --aGUCGCGGAUGcGaccGCAGUGGCGCg -3'
miRNA:   3'- aggCGGCGUCUAC-Ca--CGUCGUCGUGg -5'
32773 3' -58.6 NC_007346.1 + 215386 0.68 0.902781
Target:  5'- cCCG-CGUAcccGAUGuacccGUGCGGCAGCAUCg -3'
miRNA:   3'- aGGCgGCGU---CUAC-----CACGUCGUCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 56328 0.71 0.768556
Target:  5'- gCCGCCGCacuuugucugggGGAcGGUGCAcuuggagcacuuGguGCACCc -3'
miRNA:   3'- aGGCGGCG------------UCUaCCACGU------------CguCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 4977 0.74 0.601013
Target:  5'- aUUGCCGCAGAUGccgccucgcGUGCGGCAGaCAUg -3'
miRNA:   3'- aGGCGGCGUCUAC---------CACGUCGUC-GUGg -5'
32773 3' -58.6 NC_007346.1 + 401550 0.71 0.732764
Target:  5'- nCCGCgGCuuguuGAuuUGGaGCAGguGCACCg -3'
miRNA:   3'- aGGCGgCGu----CU--ACCaCGUCguCGUGG- -5'
32773 3' -58.6 NC_007346.1 + 137844 0.71 0.76768
Target:  5'- -aUGCCGCGaGUGGcggcccaUGCAGCGGCAgCg -3'
miRNA:   3'- agGCGGCGUcUACC-------ACGUCGUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.