miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 188942 0.71 0.842269
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189221 0.66 0.979945
Target:  5'- uGGUGAUGgAGGugGcGGCGgugaCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCugCaCCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189251 0.67 0.975577
Target:  5'- uGGUggaGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCG---UUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189287 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189332 0.71 0.864099
Target:  5'- uGGUGAUGgGGGugGUGGUGauGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189389 0.69 0.924586
Target:  5'- aGGCGAUGgAGGugGcggugaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189479 0.68 0.954844
Target:  5'- uGGUAAcGguGGugGUGGUGaCGGugGu -3'
miRNA:   3'- -CCGUUaCguCCugCACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189521 0.73 0.794325
Target:  5'- cGGUGAUGguGGugGUGGagaCGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197658 0.76 0.629514
Target:  5'- cGGCGAUGguGGugGUGGagauGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCg---UgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197694 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197748 0.82 0.317122
Target:  5'- aGGCGAUGguGGugGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197778 0.7 0.884307
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197808 0.69 0.924586
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGc -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197844 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197898 0.72 0.834655
Target:  5'- aGGCGAUGguGG-CGaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuGC-ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197928 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197958 0.7 0.902781
Target:  5'- uGGCGGUGguGGugGagaUGGUGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC---ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198000 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198051 0.7 0.914093
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198087 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.