miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 128455 0.66 0.983703
Target:  5'- uGGCGccugccaccAUGguGGAgGcGGCGgCGGugGa -3'
miRNA:   3'- -CCGU---------UACguCCUgCaCCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128545 0.7 0.914093
Target:  5'- uGGCGAUGCAGa---UGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACGUCcugcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128617 0.72 0.826882
Target:  5'- uGGCGGUGgAGGugGUGGaGgUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugCACCgUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128719 0.67 0.964827
Target:  5'- cGGCGGcgGUGGcGGCgGUGGCGgCGGugGu -3'
miRNA:   3'- -CCGUUa-CGUC-CUG-CACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 144977 0.66 0.979945
Target:  5'- uGGUGAUGCAacGCGUGGUGauucaaCGGAUGg -3'
miRNA:   3'- -CCGUUACGUccUGCACCGUg-----GCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 160545 0.73 0.759747
Target:  5'- cGGaCGuUGUAccGGACGUGGCACCGGuuGu -3'
miRNA:   3'- -CC-GUuACGU--CCUGCACCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 160578 1.1 0.006394
Target:  5'- gGGCAAUGCAGGACGUGGCACCGGACGu -3'
miRNA:   3'- -CCGUUACGUCCUGCACCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 178710 0.7 0.896821
Target:  5'- uGGUGAUGguGGAaGUGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 179755 0.68 0.950746
Target:  5'- -aCAGUGCAucuaauuGGACuucacaugaGGCACCGGGCGg -3'
miRNA:   3'- ccGUUACGU-------CCUGca-------CCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 180691 0.68 0.954844
Target:  5'- aGGCAGUgaagGCGGaGAcCGUGggccGCACUGGACa -3'
miRNA:   3'- -CCGUUA----CGUC-CU-GCAC----CGUGGCCUGc -5'
32775 5' -56.7 NC_007346.1 + 180864 0.72 0.810883
Target:  5'- uGGCGGUGgAGGugGgggaaauaaUGGCGuuGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugC---------ACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 181836 0.7 0.896821
Target:  5'- nGGCGGUGguGGugGcggUGGCGg-GGACGg -3'
miRNA:   3'- -CCGUUACguCCugC---ACCGUggCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 181866 0.77 0.544694
Target:  5'- uGGCGGUGguGGugGUGGCGgUGGcaaugGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 184756 0.67 0.97784
Target:  5'- uGGUGAUGgGGGugGUGGgGagGGugGc -3'
miRNA:   3'- -CCGUUACgUCCugCACCgUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188013 0.66 0.981897
Target:  5'- cGGCGGUGacggGGGugGgGGCGacggCGGAUGa -3'
miRNA:   3'- -CCGUUACg---UCCugCaCCGUg---GCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 188052 0.66 0.986901
Target:  5'- aGGUGAggGUGGcGGCGUgGGCGgCGGugGg -3'
miRNA:   3'- -CCGUUa-CGUC-CUGCA-CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188136 0.69 0.926586
Target:  5'- uGGCGGUG-GGGACGguggaggaggugagGGCGgCGGugGg -3'
miRNA:   3'- -CCGUUACgUCCUGCa-------------CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188804 0.82 0.317122
Target:  5'- uGGCGAUGguGGugGUGGCGauGGugGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188858 0.79 0.472582
Target:  5'- uGGCGAUGguGGugGUGGUAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188888 0.77 0.582102
Target:  5'- cGGCGAUGguGGugGUGGUGauGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.