miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 308154 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308427 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307620 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 61185 0.75 0.686382
Target:  5'- aGGCGAagGC-GGAgGUGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUa-CGuCCUgCACCGUGGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 307965 0.74 0.714386
Target:  5'- aGGCAAUGguGGugGaGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308765 0.74 0.732764
Target:  5'- gGGCAAUGguGGugGaGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 58095 0.73 0.759747
Target:  5'- uGGCAGUGaAGGAgGUGGCGauaaUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311475 0.73 0.759747
Target:  5'- uGGCGGuggaguUGguGGAgGaGGCACCGGugGu -3'
miRNA:   3'- -CCGUU------ACguCCUgCaCCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 160545 0.73 0.759747
Target:  5'- cGGaCGuUGUAccGGACGUGGCACCGGuuGu -3'
miRNA:   3'- -CC-GUuACGU--CCUGCACCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308376 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307842 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 314684 0.73 0.772051
Target:  5'- gGGCGGUGguGGAUauugggcagggggugGUGGUugUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUG---------------CACCGugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189521 0.73 0.794325
Target:  5'- cGGUGAUGguGGugGUGGagaCGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 306045 0.72 0.802671
Target:  5'- aGGCGGaagggGguGGACGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUa----CguCCUGCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 180864 0.72 0.810883
Target:  5'- uGGCGGUGgAGGugGgggaaauaaUGGCGuuGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugC---------ACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198549 0.72 0.810883
Target:  5'- uGGCGGUGguGGAgaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198444 0.72 0.810883
Target:  5'- uGGCGGUGguGGAgaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198000 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128617 0.72 0.826882
Target:  5'- uGGCGGUGgAGGugGUGGaGgUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugCACCgUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189287 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.